Pseudomonas umsongensis: HGP31_12800
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Entry
HGP31_12800 CDS
T06842
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pum
Pseudomonas umsongensis
Pathway
pum03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HGP31_12800 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pum03400
]
HGP31_12800 (ligD)
Enzymes [BR:
pum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HGP31_12800 (ligD)
DNA repair and recombination proteins [BR:
pum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HGP31_12800 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QJC79148
LinkDB
All DBs
Position
2787636..2790233
Genome browser
AA seq
865 aa
AA seq
DB search
MNKNLDDYNRMRDFSATSEPVAVKPKGRKKTKDHALQFCIQKHDASRLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPQDDP
AKAYAKGRLKFELQGEKLGGLWNLVRTHMPGKQEQWFLIKHQDGAARPESDYDVVVAEPD
SVLSERTLVAKTPKTPKASKATKAKSIKQPASPARKEQSAPLTGARKAELPDQIKPELAT
LVEKAPGGQWSYEVKFDGYRIMARIDHDEVKLFTRNGHDWTHKLPDQAKALAGLGLESAW
LDGEMVVADEQGVPDFQALQNAFEAGRSGNILYYLFDLPYLNGVDLREVPVEERRAALST
VLKTSKDPLLRFSDAFGEDPEALLNSACQMQMEGLIGKRLGSPYVSRRSSDWVKLKCKHR
QEFVIVGFTDPKGSRSAFGALLLGLHDRDSGELRYAGKVGTGFTEATLNSIHQQLKPLQT
KKAAVVNPPSGAEFKAVHWLKPSLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKDITEER
PTAVKTTPAKKTVAKPTTSKKKVEPAPSQVGLEQGKVRITHPDRVIDASTGATKVQLAQY
YASVAEWILPQLKDRPVALVRAPDGIAGELFFQKNAERLAIPGITTLDQQLTGQPMMVIN
NAEALIGAVQMSTVELHTWNATTDNLDKPDRFVLDLDPDPALPWKRMVEATQLTLTVLDE
LGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSHMAKMLPERFSAVSGPKNRVG
RIFIDYLRNGLGATTICAYAVRTREGLPVSMPIFREEVPTLKGGNQWNIHNAHERLAEVG
DEPWADLKKTRQTITAEMRRRVGMK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaaatctcgatgactacaaccgcatgcgcgatttttcggcgacgtcggaaccc
gtcgccgtcaaacccaagggcagaaaaaaaaccaaggatcatgccttgcagttttgcatc
cagaagcacgatgcttcgcgcctgcattacgactttcgcctggagctcgacggtgcgctc
aagagttgggcggtgcccaagggaccgtcgctggaccccaaggtcaagcgtttggcggta
catgtcgaagatcatccgctggattacgccacctttgaaggcagcatccccgaaggtcac
tacggcgcgggggatgtcatcgtctgggaccgtggcgtgtggattccccaggacgatccg
gcgaaggcctatgccaagggccggctcaagttcgaactgcaaggcgagaagctcggcggc
ctgtggaacctggtgcgcacgcacatgccgggcaagcaggagcagtggttcctgatcaag
caccaggacggtgccgcccggccggaaagtgattacgacgtggtggtcgccgaacccgac
agcgtgctcagcgaacggactctcgtcgccaagacacccaagacacccaaagcatccaag
gccaccaaagccaagtccatcaagcagcccgcgtcgcctgcacgcaaagaacaatccgca
ccactcacaggcgcgcgcaaggccgaactgcctgaccagatcaagccggagctggcgacg
ctggtggaaaaggccccgggcggacagtggagttatgaagtcaagttcgacggctaccgc
atcatggcgcgtatcgaccatgacgaggtcaagctcttcactcgcaacggccacgactgg
acccacaagctgcccgaccaggccaaggcgctggcggggctgggcctggaatcggcctgg
ctcgacggtgaaatggtggtggccgacgagcaaggcgtaccggatttccaggccttgcaa
aatgccttcgaagcgggccgcagtgggaatatcctctactacctgtttgatttgccctat
ctcaatggagtggacctgcgcgaagtgcccgtcgaggagcgcagggcggcgctctcgacc
gtgctcaaaaccagcaaagacccattgctgcgcttctccgacgcctttggcgaagacccg
gaagccctgctcaatagcgcctgccagatgcaaatggaaggcctcatcggcaaacgcctg
gggtcgccctatgtatcgcggcgcagcagtgactgggtcaaactcaaatgcaagcatcga
caggaattcgtcatcgtcggcttcaccgaccccaaaggttcacgcagtgccttcggtgcg
ttgctcttggggttgcacgaccgcgacagcggtgagttgcgatacgcaggcaaggtcggc
accgggttcaccgaggcaacgctcaacagcattcatcaacaactcaagcccttgcagacg
aaaaaagccgccgtggtcaacccgcccagcggtgccgagttcaaggctgtgcattggctc
aaacccagcctgctggcggaagtggcctttgccgaaatgaccaaggacggttcggtgcgc
catgcggtgttccatggtctgcgcgatgacaagcccgccaaagacattaccgaggagcga
ccgactgccgtgaaaactacccccgcgaaaaaaaccgtcgccaaaccgacgacctcgaag
aagaaagtcgaaccagcaccctctcaagtcggtcttgagcagggcaaggtacgcatcacc
caccccgaccgggtgatcgacgccagcacgggcgcgaccaaagtgcagctggcgcagtac
tacgccagtgttgccgaatggattctgcctcagctcaaggaccgacccgtggcgctggtg
cgtgcaccggatggcatcgctggcgaactgtttttccagaaaaacgccgaacgcctggcg
atccccggcatcactaccctcgaccagcaactcacaggccagccgatgatggtgatcaac
aacgccgaagccttgattggtgcggtgcagatgagcacggtcgagctgcacacctggaac
gccaccaccgacaacctcgacaaacccgaccgcttcgtcctcgacctcgacccggacccg
gcgctgccatggaagcgcatggtcgaggccactcagttgaccctgacggtgctcgacgaa
ctggggctcaaggcgttcctcaagaccagcggcggcaagggtatccacctggtagtgccg
ctgactcgcaagcacggctgggatgaggtcaaggacttcagccacgccattgtcagccac
atggccaagatgctgccggagcgtttttctgctgtttcggggccgaagaaccgggtaggg
cggatcttcatcgactacctgcgtaatggcttgggcgccacgaccatctgcgcctacgcc
gtgcgtacccgcgaaggattgccggtgtcgatgccgatttttcgggaagaagtccctacg
ctcaagggcggcaaccagtggaacatccacaacgcgcatgaacgcctggccgaagtgggc
gatgagccttgggcggacctgaagaaaacccggcagacgattacagccgagatgcgacgg
cgagtgggaatgaagtag
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