Psychrobacter urativorans: AOC03_10880
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Entry
AOC03_10880 CDS
T04087
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pur
Psychrobacter urativorans
Pathway
pur03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOC03_10880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pur03400
]
AOC03_10880
Enzymes [BR:
pur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOC03_10880
DNA repair and recombination proteins [BR:
pur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AOC03_10880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALF60481
UniProt:
A0A0M4U604
LinkDB
All DBs
Position
2530066..2533722
Genome browser
AA seq
1218 aa
AA seq
DB search
MPISALTDAFAPINQQLFPIQHTQRRWLAPAHGAASSLWLASLVQTPIWNVASRLKVVVA
RDQNQLNQIETELAFCGVDAYVFPDWETLTYDELSPHQDIVSERINLLTDMPKSGVLLIS
IQALMHRVAPPSWLIGQHFDLSVGDRFDINTQRELLAKAGYRAVDNVFEPGEFAVRGSIV
DIFAMGQPFPLRLDLFDDEIETIKFFHPQTQRTLTDVDLKNLVAGNDNSMGQESLSLLHK
LPDISQPIEQFQILPAKEFPLEEGKETFRINFAAMFPNTSSRKFELYKDVMAGIASSGLE
YYQPLFFSAEDWQQESSLFAYLPSDTLFITDELISERQVDYWSQIQRRYEERRHDVDKPI
VAPELLYLLSNTLNEHLNNYPRVILSERNELALASSQLQGLVTLSAQVPPQLSVNHQKAE
PLAELLDFLLLQAQTGTPVLIVAETAGRREILIELFKGKIDITGYATFKEFLAAEHSSAL
NDDNQRPHVGLTVAPIERGVYVPERLVMISETQLFGRQVLQTRRRRQSGVSEEFLVKSVT
EMTEGSPIVHIEHGIGRYSGLITLDVGDGEQEFIHLKYADDASIYVPVANLQMISRYSGG
DPAHAPLHKIGSGKWDKAKQKALEQIHDVAAELLNMQARREAKVGIHFKIDNSQYELFAS
QFEFEETPDQANAIHAVMADMKQNQPMDRLICGDVGFGKTEVAMRAAFIAVNAGYQVAIL
VPTTLLAGQHEDNFLDRFADWPIRIETLSRFGGKKHQETVLTDLAAGKVDIVIGTHKLLQ
PDVKFANLGLMIVDEEHRFGVRHKERIKAIQTDVDSMSMTATPIPRTLNMALSGMRDMSI
IATPPARRLAIKTFVMQKTDALMKEAILRELLRGGQVYLLHNDVASIERMAETIRDLVPE
ARVGVAHGQMQERQLEQIMQQYYHKKFNVLICSTIIETGIDVPNANTIIIERADKFGLAQ
LHQLRGRVGRSHHQAYCYLLVPSIKGLKGDAKRRLHAIERANTLGAGFMLASEDLEIRGA
GELLGKQQSGNMQAIGFSLYMDMLERATKAIKAGKEPDLNTPLSLTSEINLHASALIPEE
YVHDVHQRLLFYKRIGSVGDKEALIDIRTEMIDRFGTLPAQTQQLFAVHGLRLQAEPLKI
NKIDANANSMTLEFAPDTPVDAFAIIKLIQSDSQHYRMNGASGIRYSNADKLETALQRVT
VVEDLLRYFTEHMVIEAT
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgcctatctctgctttaactgatgcatttgctcctattaatcagcaactatttcctatt
caacatacgcagcgacgttggctggcacctgctcatggcgctgctagcagtctttggctt
gccagtttagtacaaacgcctatttggaatgtggcgagccgtctaaaagttgtggtggcg
cgcgatcaaaaccagctcaatcaaatagaaactgagctggcattttgcggcgtcgatgct
tatgtgttcccagattgggaaaccttgacctatgacgagctatcaccgcatcaggatatc
gttagcgagcgtattaatttgctaaccgatatgccaaaatcgggcgtgctgctgatttca
atccaagcgttgatgcaccgtgttgcaccgccgagctggttgattggtcagcattttgat
ttgagtgttggcgatcgttttgatattaatactcagcgtgagctattggcaaaggcaggc
taccgagcagttgataatgtgtttgagccgggtgagtttgcggtacgcggtagcattgtt
gatatttttgcgatggggcaaccattccctttgcgtttagatttatttgatgatgaaatt
gaaaccattaagtttttccatccgcaaacacagcgcacactgacagacgtggatctaaaa
aatctagtcgccggcaatgataacagtatggggcaagagtcattgtcgctactgcacaaa
ctgccagatatctctcagcctattgagcaatttcagatactaccggcaaaagagtttcca
ttagaagaaggcaaagagacctttcggataaactttgccgcgatgtttcccaataccagt
agccgtaaatttgagctgtataaagatgtgatggcagggattgctagtagcggtcttgag
tactatcagccgttgttctttagcgcagaggattggcagcaagagagtagtctgtttgct
tatttgcccagcgatacgttgtttattacggatgagttgattagtgagcgacaggtcgat
tattggtcacaaattcagcgccgttatgaggagcgtcgtcatgatgtggataaacctatc
gttgcccctgaacttttatatttattatccaatactctaaatgagcatcttaataattat
ccgagagtcatcttaagtgagcgcaacgagctcgcattagcaagcagtcagctgcaaggc
ttagtgactttaagcgcccaagtgccaccgcaattatcggttaatcatcagaaagcagag
ccgttagcggagctgctagactttttgctgctgcaagcgcaaacgggtacacccgtatta
atcgttgctgaaactgcgggtcgtcgcgagattttaattgagctgttcaaaggcaagatt
gatataactgggtatgcgacttttaaagaatttctggcggctgaacattctagtgctttg
aatgatgacaatcaacgtccgcatgtcggactgacggtcgctcccattgagcgcggggtt
tacgttcctgaacgtttggtgatgattagtgaaacgcagctgtttggcaggcaggtacta
caaacacgccgccgtcgtcagagtggcgtctcagaagagttcttagttaaaagcgtcact
gagatgaccgagggcagtccaattgtccatattgagcatggtattggacgctatagtggt
ttgattaccttagatgtgggtgatggtgagcaagagtttattcatctaaaatatgcagat
gatgccagtatttatgtaccggttgctaatctgcaaatgattagccggtatagcggtggc
gatccggcgcatgctcctttacataaaatcggtagcgggaaatgggataaagccaagcaa
aaagcgctggaacaaattcatgacgtcgctgccgaattgctgaatatgcaggcaaggcgt
gaagccaaagttggtattcattttaaaattgataactcgcaatatgagttatttgccagt
cagtttgagtttgaagaaacgcctgaccaagccaatgctattcatgccgtgatggcagat
atgaaacaaaatcagccgatggatcgcctgatttgtggtgatgtgggttttggtaaaact
gaagtggctatgcgcgcagcattcattgcggtaaatgcgggctatcaagtagcaattctg
gtaccgacgaccttgctggcaggtcagcatgaagataactttttagaccgctttgccgac
tggccgatacgtattgaaacgttgtcgcgttttggcggtaaaaaacatcaagagacggtt
ttgacagacttagccgctggcaaagtcgatatagttattggcactcataagttgctgcaa
cctgatgttaagtttgccaatttaggcttgatgatagttgatgaagagcaccgttttggt
gtccgccataaggagcgtatcaaggcgattcagactgatgtggatagtatgtcgatgacg
gctactccgattccgcgtacgcttaatatggcgttgtcaggtatgcgtgatatgtctatt
attgctacaccgccagcgcgccgcttagcgattaaaacgtttgtgatgcaaaagactgat
gctttaatgaaagaggctattttacgagagctattacgaggcggacaagtttatttactg
cataacgatgttgccagtattgaacgcatggcagaaaccattcgtgatttggttcctgaa
gcgcgagtaggcgtcgcacatggacagatgcaagagcgccaacttgaacaaattatgcag
cagtattatcataaaaaattcaacgtgcttatctgtagtacgattattgaaaccggtatt
gatgtccccaatgccaataccattatcattgaacgggcggataaatttggcttagcacag
ctgcatcaattgcgtggtcgggtaggtcgtagccatcatcaagcctattgttatttgctc
gtaccatcgattaaagggctcaaaggcgatgctaagcgtcgtctgcatgccattgagcgc
gccaatacgctaggtgcaggctttatgttagcaagtgaagatttagagattcgtggtgct
ggtgagttactgggtaaacagcaaagtggtaatatgcaagcgattggttttagcttgtat
atggatatgttggagcgtgctactaaggcaattaaggcaggaaaagagccagatttaaat
acaccgttatcattgaccagtgagattaatttacatgcatcggcactgattccggaagaa
tatgtgcacgatgtccatcagcgtttattattttataagcgtattggtagcgtgggtgat
aaagaagctctgattgatattcgtactgagatgattgatcgttttggcacgttacctgcg
caaactcaacagctatttgctgttcatggtctgcgtctgcaagcggaacccttgaagatt
aataaaatcgatgcaaatgctaatagtatgacgctggaatttgcgcctgatacgcctgtt
gatgcattcgctattataaaattaattcagtcggacagtcagcattaccgtatgaatggc
gcgtctggtattcgctatagcaacgctgataagcttgagaccgccctgcaacgggtcact
gtggtagaagacctattgcgctacttcactgaacacatggttatagaggcgacataa
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