Pusillimonas sp. T7-7: PT7_1748
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Entry
PT7_1748 CDS
T01486
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
put
Pusillimonas sp. T7-7
Pathway
put03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
put00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PT7_1748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
put03400
]
PT7_1748
Enzymes [BR:
put01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PT7_1748
DNA repair and recombination proteins [BR:
put03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PT7_1748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
Glyco_tran_WecG
AroM
Pullulanase_Ins
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEC20288
UniProt:
F4GMJ4
LinkDB
All DBs
Position
1866330..1869806
Genome browser
AA seq
1158 aa
AA seq
DB search
MMGYMNTETASSLTIPTTKTVLAALKPGQRHIQALPPGSGDAWWLADLARASRKTVVVLC
ADPLAAQRLADEVLLFAPDLRVRQLPDWETLPYDGFSPHQDLISERLRTLHALMQEQVDV
LTVPITTALYRLAPPEFLAAYTFAFRQGDKLDEDGLRKQLTRANYSHVTQVTAPGEFCIR
GGLIDLFPMGSALPYRLDLFDDEIESIRSFDIDTQRSLYPVKDVQLLPGREFPMDEASRT
QFRARFREVFEGDPSRALPYKDIGNGIAFAGIEYYLPLFFSQTATLFDYLPEQAFTVTLG
DIDQAIQRFAQDTHSRYQFLKSDRERPVLPPEQLFLDQESLFTRLKSFARLVLSSEQSHP
DFQLAPKVAVARRAEDPLASLRSLLNQDGQRVVLCADSAGRRETMLQMLAEFGLAPDSGS
ETLQDFLSSDNHCRFALIVAPLGNGFGITAQSLVLLTENDLYPSQARTLRRGKRIQEHGS
DVEAMVRDLSELREGDPVVHAQHGIGRYCGLIEMDLGEGQMEFLHLEYANGSTLYVPVAQ
LHVIARYSGADPEHAPLHQLGSGQWDKARRKAAKQVRDAAAELLALYAHRAAREGFRFKL
PPNDYQAFAEGFGFEETPDQAAAIEAVLGDMTSGRPMDRLVCGDVGFGKTEVALRAAFLA
VVNGKQVALLCPTTLLAEQHAQTFADRFADWPVKVVELSRFRSTKEVAAAIKGLNDGQVD
IVIGTHKILSKDVKFKQLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGM
SLEGIRDFSVIATAPQKRLAIKTFVRREDSGTIREALLRELKRGGQVYFLHNEVDTIHNR
RARLEELVPEARIAVAHGQMPERELEEVMKGFYQQRYNVLLCTTIIETGIDVPTANTIVI
HRADRLGLAQLHQLRGRVGRSHHQAYAYLMTPGEDAMTSNAKKRLEAIQAMEELGAGFFL
AMHDLEIRGTGEVLGESQSGNIHEIGFSMYSDMLNTAVRALKSGEEPDLDSPFSSLCEVN
LHASALLPSDYCPDVHARLGMYKKLSHAKHEDDLIHIQEELIDRYGKLPEPAQTLLATHR
LRINAEPLGVNKIDASEAQALIQFSAKPNVDPLRIIQLVQTRRDVKLAGQDKLKVEIKQG
QQVSARIDAVRNVLRALV
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgatgggctacatgaatacagaaacagcttcctcattgacgattcccacaaccaaaacc
gtgctcgccgccttgaaaccggggcaaaggcatatacaggccttgcctccgggctcgggc
gacgcatggtggctggccgatctggcgcgcgcatccagaaagacagttgtggtgctttgc
gccgaccctctggccgcccaacgcctggccgacgaggtattgctgtttgcccccgacttg
cgtgtacggcagcttcccgactgggaaaccctgccctacgacggattctcgccacaccag
gacctgatttcagagcgcctgcgcaccttgcacgccctgatgcaggaacaagtcgatgtg
ttgactgtacccattaccaccgcattgtatcgactggcgccacccgaattcctggccgcc
tacacttttgctttcaggcaaggcgacaaacttgatgaagatggcttgcgcaaacagctg
acgcgggccaattacagtcacgtaacacaggttaccgcgccaggcgaattctgtatacga
ggcgggttgatagacctgtttcccatgggttcggccctgccctatcgacttgacctattc
gacgacgaaatcgaatccatacgcagtttcgacatcgatacccagcgcagcctgtacccg
gtcaaagacgtgcaactgctccctggccgcgaatttcccatggacgaggcctcacgcacg
cagttccgggcccgctttcgtgaggtatttgaaggcgatccgtcacgcgcactgccctat
aaagacataggcaatggcattgccttcgcaggtatcgaatactatctgcccctgtttttc
agtcaaacagccacgctgttcgactatctgcccgaacaggcatttaccgttacgctgggc
gatattgatcaagccattcaacgcttcgcgcaagatacgcacagccgctatcaatttctg
aaaagtgaccgcgagcgtcccgttctgccgcccgagcagctatttcttgatcaagaaagt
ctgttcacccgccttaagtcatttgcgcggctggtcctgagcagcgaacaatcgcaccca
gacttccagctggcgcccaaggttgcggttgcccggcgtgccgaagacccgcttgccagc
ctgcgcagcctgttgaaccaggacggccagcgcgtagtcttgtgcgccgactcagccgga
cggcgtgaaaccatgctgcaaatgctggctgaattcggcctggcgcccgactcgggcagt
gaaaccttgcaggattttctaagctcagacaatcactgccgattcgccctgattgttgca
ccgctgggcaatggcttcggcatcacagcgcagtcgctggtcctgctcactgaaaacgat
ctttatcccagccaggcacgtaccctgcgtcggggcaagcgcatacaagaacatggcagc
gatgtcgaggccatggttcgcgacctgtcggaactgcgcgaaggcgacccggtcgtccat
gcccagcatggcataggccgctattgcggcttgatcgaaatggatctgggcgaggggcag
atggagttcctgcatctggaatacgccaacggcagcacgttatatgtgcctgtggcccaa
ttgcatgtcatcgcccgctatagcggggccgacccggaacacgccccactgcatcagctt
ggctcaggtcaatgggacaaggcacgccgcaaggcggccaaacaggtgcgcgatgccgcc
gccgagctgctggccctgtacgctcatcgcgcagcccgagaaggtttccgcttcaaactg
ccgcccaacgactatcaggcctttgccgaaggatttgggttcgaagaaactcccgatcaa
gcggcggccatagaggccgtcttgggggacatgacctcgggccggcccatggacaggctg
gtttgcggcgatgtgggctttggcaagactgaagtcgccttgcgcgccgcattccttgcc
gtcgtgaatggcaaacaagtcgcgctgctgtgccccaccacactgctcgccgaacaacat
gcacagacctttgccgaccgctttgccgattggccggtcaaggtcgttgagctgtcacga
ttccgctcaacgaaagaagtggctgctgccatcaaaggcttgaacgacgggcaggtggat
atcgttatcggcacccacaagattctgtcaaaagacgtgaagttcaagcaactgggcctg
gtcatcatcgatgaagagcaccgctttggcgtccggcagaaagaagccctgaaaaccttg
cgtgcagaagtcgacgtactgaccctgaccgcaacgcccatccctcgcacactgggcatg
tctctggaaggcatacgcgacttttccgtgatcgccacggcgccgcaaaagcggctggcc
atcaagacctttgtgcgtcgcgaagatagcggcaccatacgtgaagccctgctgcgcgaa
ctcaagcgtggcggacaggtgtacttcctgcataatgaagtcgacaccatacataaccgg
cgggcccgcctggaagagctggtacccgaagcgcgcatagccgtggctcatggccaaatg
ccagaacgcgagcttgaagaagtcatgaagggcttctaccagcagcgctacaacgtactg
ctatgcacgaccattattgaaaccggcatcgacgtacccacggccaatacgatcgttatc
catcgtgccgaccgtctgggcctggctcagctgcatcagctgcgcgggcgcgtgggacgc
tcacatcatcaggcctatgcctatttaatgacgcccggcgaagacgccatgacgtccaat
gccaagaaacggctggaggccatccaggccatggaagagctgggcgccggcttcttcctg
gccatgcacgacctggaaatccgcggtacgggcgaagtgctgggcgaatcgcagtcgggc
aacatccacgagatcggcttctccatgtattccgacatgttgaatacggcggtcagggcg
cttaaatcaggcgaggagcccgatctggactctcctttctcttcgctttgcgaagtcaat
ctgcacgcttcagccctgctgccatcggactattgcccggatgtgcatgcgcgcctgggc
atgtataaaaaactgtcgcacgccaagcatgaagacgatttgattcatatccaggaagag
ctgatcgaccgctacggcaagttgcccgaacccgcgcaaaccctgctggcgacgcaccgc
ttacggattaatgcggagccgctgggtgtcaacaagatagacgccagcgaagcccaggcc
cttatacagttctcggccaagcccaatgtggaccctttacgtattattcaactggtccag
acccggcgcgacgtaaagctggcggggcaagacaagctcaaggtggaaatcaagcaaggc
caacaggtgtctgcgcgtattgatgcagtgcgtaatgtgttgcgggcgttggtgtaa
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