Planctoellipticum variicoloris: SH412_005607
Help
Entry
SH412_005607 CDS
T09866
Name
(GenBank) sigma 54-interacting transcriptional regulator
Organism
pvar
Planctoellipticum variicoloris
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_5
GAF_3
AAA
GAF
AAA_16
GAF_2
AAA_2
HAP1_N
MCM
Motif
Other DBs
NCBI-ProteinID:
WLD15398
LinkDB
All DBs
Position
7155071..7158136
Genome browser
AA seq
1021 aa
AA seq
DB search
MNSQGGLIRWSLAVAGGLVVTYCVAVLVFVATAPDLRLRFLMVDQPRPAGEATPGIEIIQ
TEGLFEEKIDWRGDRPEPGDRLQYVADQPMQDFIQYVHYLWKLRSAEVPPGGVILQGADP
LASELPKLIQEENGPRWVEIGFYRPSTGQTLRAALPVRSLPWGDVALTLLWFVLELGIFS
LGALAFWNRPFDRPAQLFYAMCIVTMGAFVGGYHWWLLAGTFWLNLPFVLCGVLAPVVTL
HFFLSYPRAKFPLTVIPRTTVMVMYAVPLLAFVGFLIVDSLVWSQSLHPLPAERAETLAW
LNHLKNGIYAYLAIAGLYFLGTLVALISSVVHTRNPVERDQVKFILWAGLIATVFIGYTL
GLAYVSRPKFVLGGARVPMFAASLVFMVAYAVSIVRYKLMLIDQIINRGMLYYALSFAAT
AGLALTVASVSLAAAHWNTNLSRPQTLLVAMLMMIAVTLMLWVRDNWQQLVDRKFFREKY
RLDKALQRMNRAVGQLADPQFLSERMLNSCCDVLQIDRAALYLREGKTATFRLVAAQGMS
SDQPRQVTATPEFLLALTQDAALQRVSHGTREDLSPIQSTLRDLHAELAHSLEMEDEPVG
LVVLGPKQNSTPFTGEDVTFLTALGQITGVALHCAKIHQDLGHLNEELRLKVERIAQQRQ
QITMLQAELADGMTSNRSDEPTEEFQRGEIRGNSPSLLRVLDTVRKVAVSDTSVLVRGES
GTGKELLAQAIHQNSPRRNGPLISVHCAALSAGLLESELFGHVKGAFTGASSDKRGRFEL
ANGGTLFLDEIGDITPETQIKLLRVLQEREFEPVGGSVTIQTDVRVIAATHQNLERLIAE
GKFREDLYYRLNVISITLPPLRERREDLLELATWFLKRAASKGGKKILEFEEDALDALLS
YQWPGNIRELENVIERAVVLADDAVIRLTDLPPDIQHQSPADRHRTAGRAQRPALTSVGA
TRGYLEESAIPADWESAAVSEREALVQSLRQCRGNKAEAARLLGLPRSTYFSKLKKYGLL
P
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
gtgaattcacaaggcggtctcattcgctggtcgctggcggtcgccgggggactggttgtc
acgtattgcgtggcggtcctggtcttcgtcgcgacagcccccgatctccgactccggttt
ctcatggtcgaccagccccgaccggcgggcgaggccacgcccggcatcgagatcatccag
acggaaggtctgttcgaagagaagattgactggcgcggcgaccgacccgaacccggagat
cgcctgcagtacgtcgccgatcagccgatgcaggactttattcaatacgtgcactacctc
tggaagctccgttcggcggaagttccgccggggggagtgattctgcagggggctgatccg
ctcgccagcgaactcccgaagttaattcaggaggagaatggcccacggtgggtggaaatc
ggtttttatcgcccttcgaccgggcagaccctgcgggcggcgctgccggtccgctcgctg
ccgtggggtgacgtcgcgctgacgctgctctggttcgtgctggagctgggaatcttttcg
ctgggggctctcgcgttctggaaccgcccgttcgatcgaccggctcagctcttctacgcc
atgtgcatcgtgacgatgggagccttcgtcggcggttaccactggtggctgctggccggc
acgttctggctcaacctccctttcgtgctctgcggcgtcctggcgccggtggtgacgctt
cacttcttcctcagctatccccgcgccaagtttcccctgactgtcataccgcggacgacg
gtcatggtgatgtatgccgtgcctctgctggccttcgtcggatttctgatcgtcgacagc
ctggtctggtcgcagtccctccacccgttgccggcagagcgggccgaaacgctggcctgg
ctgaaccatttgaagaacggcatctacgcctatctggcgattgcggggctgtattttctc
gggacgctggtggcgctcatctccagcgtggtgcatacccgcaatcccgtcgaacgggat
caggtcaaattcattctctgggcgggcctgatcgccacggtcttcattggctacacgctt
gggctggcgtatgtctcgcggccgaagttcgtcctgggaggcgcccgggtgccgatgttt
gcggcgagcctcgtcttcatggtcgcttacgcggtgagcatcgtccgttacaagctgatg
ctgatcgatcagatcattaaccgcggcatgctgtattatgccctcagcttcgcggccacc
gcgggactggcgctgacggtcgccagcgtcagtcttgccgcggcccattggaacacgaat
ctgtcccggccgcagacgctgctggtggcgatgctgatgatgatcgccgtcacgctgatg
ctgtgggtccgcgacaactggcagcagcttgtcgaccgtaagttctttcgcgagaagtac
cgcctcgacaaagcgctgcagcgcatgaaccgggccgtcggccagctcgccgacccgcag
ttcctgtccgagcgcatgctcaattcgtgctgcgacgtcctgcagatcgaccgcgccgcc
ctctatctgcgcgaggggaaaaccgcgacgttccggctcgtcgccgcgcagggcatgtcg
tcggatcagccgcgacaggtcacggcgaccccggagttcctgctggcgttgacgcaggac
gccgcgctgcagagggtttcgcacggaacgcgcgaagatctctcccccattcagagtacg
ctccgcgacctgcatgccgagctggctcacagcctggagatggaagacgagccggtcggg
ctggtggtcctgggacccaaacagaacagcacgccgttcacgggcgaagacgtcacgttt
ctgaccgccctgggtcagatcaccggcgtcgccctgcattgcgccaagatccatcaggac
ctggggcacctcaacgaagagttgcgactgaaggtcgaacggatcgcccagcagcggcag
cagatcaccatgctgcaggcggagctggccgacggcatgaccagcaaccggtccgacgaa
ccgacggaggagtttcagcgcggcgaaatccgtggcaacagcccgtcgctgctgcgcgtg
ctcgacaccgtccgcaaagtcgccgtcagcgatacctcggtgctggtccggggcgaaagc
ggcaccggcaaggaattgctcgctcaggcgatccaccagaacagcccgcggcggaacgga
ccgctgatcagcgtccattgcgccgccctgtccgccgggttgctcgaaagcgaactgttc
ggccacgtgaagggagcgttcaccggcgcttccagcgacaaacggggccggttcgaactg
gccaacggcgggacgctgtttctcgacgagatcggcgacatcacccccgagacgcagatc
aaactgctccgcgtgctgcaggaacgcgaattcgagccagtgggcggctccgtcacgatc
cagaccgacgtgcgggtgatcgcggcgacgcatcagaatctcgagcggctgatcgcggag
ggcaagttccgcgaagatctctactaccggctcaacgtgatcagtatcacgctgccgccg
ctgcgcgagcgtcgggaagacctcctggaactggcgacgtggtttttgaagcgggcggcg
tcgaaaggggggaagaaaatcctcgaattcgaggaggacgccctggatgcgctgctcagc
tatcagtggcccggcaacatccgcgagctggagaacgtcatcgagcgggccgtcgtcctg
gccgacgacgcagtcatccggctcaccgatctccctccggacatccagcatcagtcgcct
gccgaccgccatcgaacggccggacgcgcccagcggccggcgttgacatcggtgggcgcg
acgcgcggttatctggaggagtcggccattccggcggactgggaatccgccgccgtttcc
gaacgggaagccctcgtgcagtccctccgtcaatgccggggcaacaaagccgaagccgcc
cgattgctgggcctcccgcgcagtacctacttcagcaagctgaagaaatacggattgctg
ccatag
DBGET
integrated database retrieval system
