Providencia vermicola: G3341_15990
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Entry
G3341_15990 CDS
T06449
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pvc
Providencia vermicola
Pathway
pvc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pvc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G3341_15990 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvc03021
]
G3341_15990 (rpoD)
Transcription machinery [BR:
pvc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G3341_15990 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DMP1
Eclosion
D27-like_C
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QIC17876
UniProt:
A0A8E3VYF0
LinkDB
All DBs
Position
3545138..3547081
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AA seq
647 aa
AA seq
DB search
MKIPFECSCWPIVSPTDTNLNTQKCGYRLMEQNPQSQLKLLVTKGKEQGYLTYAEVNDHL
PEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLILAETTSDTDEDAAEAAAQVLSSVES
EIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYD
LVEAGESRLSDLITGFVDPNAEEDLAPTATHVGSELPQEELDKDDDEDDDEDEDGDDSDS
DDDNSIDPELAREKFGELRTQYEKTRQHIKQFGRSNAQTALAIEELSEVFKQFRLVPKQF
DYLVNNMREMMDRVRFQERTIMKLCVEQCKMPKKNFITLFSGNETSETWLTAAKAMNKPW
CEKLLEVEEEILRCLQRLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRL
VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ
ARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMMMPEDKIRKVLKIAKEPIS
METPIGDDEDSHLGDFIEDNTLELPLDSATSESLRSATHEVLAGLTAREAKVLRMRFGID
MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDE
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
ataaaaatcccctttgaatgttcttgttggccgattgtttcgccgaccgacaccaatcta
aatactcagaagtgtggataccgtcttatggagcaaaacccgcagtcgcagcttaagcta
ctcgtaaccaagggtaaggagcaaggttacttaacctatgctgaggtcaacgaccatctg
ccggaagatatcgtcgattcagatcagattgaagatatcatccagatgattaatgacatg
ggcatccaggtcatggaagaagcacctgacgccgatgatttgatactcgctgaaaccact
tccgatacggatgaagatgcagcagaagccgctgctcaagttctatccagtgtggaaagt
gaaattggtcgtactacagaccctgtgcgcatgtacatgcgtgaaatgggtaccgtcgaa
ctcttaacccgtgaaggtgagatcgacatagcaaaacgtatcgaagatggcatcaaccaa
gttcagtgctctgttgcagagtaccctgaagccattacttatctactcgaacagtatgac
ctcgttgaagcaggcgaaagccgcttatccgatttgattactggtttcgtcgatcctaac
gctgaagaagatttagcaccaaccgcaacacacgttggttctgagcttccacaagaagag
ttggataaagacgatgatgaagacgatgatgaagacgaagacggcgatgacagtgatagc
gatgatgataacagcatcgatcctgaactagcccgtgaaaaattcggtgaattgcgtacg
caatacgaaaaaacgcgtcagcacattaagcagtttggtcgtagcaatgcacaaacagca
cttgctatcgaagaactttctgaagtcttcaagcaattccgtttagtgcctaagcaattt
gactatctggtcaataacatgcgtgaaatgatggatcgcgttcgtttccaagaacgtact
atcatgaagctatgtgttgaacagtgcaaaatgcctaagaaaaacttcatcacgttattc
agtggcaatgaaaccagtgaaacttggttaacagcagccaaagcgatgaacaagccttgg
tgtgaaaagctgctagaagttgaagaagaaattttgcgttgtctgcaaagattacgtcaa
attgaagaagaaactggcctgacaattgaacaggtaaaagatattaaccgtcgtatgtct
atcggtgaagcgaaagcacgccgtgcgaaaaaagagatggttgaagcaaacttacgtctg
gtaatttctatcgcgaagaaatataccaaccgtggtttgcaattccttgacctaatccaa
gaaggtaatattggtctgatgaaagcggttgataaatttgaatatcgccgtggttataaa
ttctcgacctatgcaacttggtggatccgtcaggcaattacacgttctatcgcggatcag
gctcgtaccattcgtattccggtacatatgattgaaaccatcaacaaactgaaccgtatc
tctcgtcagatgctacaggaaatgggccgtgaaccttcccctgaagagttagcggaacgt
atgatgatgccggaagacaagatccgtaaagtcctgaagatcgctaaagagccaatctca
atggaaacgccaatcggtgatgatgaagattcacatctcggcgactttattgaagataac
acgttagagctaccattagactcagcgacatcagaaagtctgcgttcagcaactcatgaa
gtgctagcaggtctgacggctcgtgaagcaaaagttctacgtatgcgttttggtatcgat
atgaacaccgaccataccttagaagaggtgggtaaacagttcgacgttacgcgtgagcgt
attcgtcaaatcgaggctaaagctctacgtaaattgcgtcatccaagccgctctgaagtt
ctacgtagcttccttgacgaataa
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