Pseudomonas viridiflava: CFBP1590__1954
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Entry
CFBP1590__1954 CDS
T06554
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pvd
Pseudomonas viridiflava
Pathway
pvd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFBP1590__1954 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvd03400
]
CFBP1590__1954 (mfd)
Enzymes [BR:
pvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFBP1590__1954 (mfd)
DNA repair and recombination proteins [BR:
pvd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFBP1590__1954 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
SMS09540
UniProt:
A0A1Y6JK37
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All DBs
Position
I:complement(2014971..2018423)
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AA seq
1150 aa
AA seq
DB search
MPVLRLPLLSAAAGKHHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKF
FAPTLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKVPY
RIDLFDDEIETLRTFDPDTQRSIEKVESVRLLPAREFPLKKEEVTRFKARFRERFDVDFR
RSPIFQDLSSGITPAGIEYYIPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWKDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDIEAGGERSRFPAQSLPDL
AIEAKAVQPLAALSKFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWLDFVDG
KDRLAITIAPLDEGLLLEDPALALVAESPLFGQRVMQRRRREKRTDGGNNDAVIKNLTEL
REGAPVVHIDHGVGRYLGLATLEVENQVAEFLMLAYAEDAKLYVPVANLHLIARYTGSDD
EMAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGF
PFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVP
TTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDD
VKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIA
TPPARRLSVRTFVMEQNNPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEAR
IGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRKQVTRDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEAYL
PDVHTRLILYKRIANAADEDGLKDLQVEMIDRFGLLPEPTKALVRITQLKLRAEQLGIRK
IDAGPQGGRIEFAAETPVDPLTLIKLIQSQPNRYKFEGATLFKFMVPMERADERFNTIEA
LLERLTPTTA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
gtgccagttctgcgtctaccgcttctttctgccgctgcaggcaaacaccactggggcaat
cttcccggtgccgcactgagcctggcaatcgccgaggcggccagcgctgcaaagcgcttc
accctgcttctgaccgccgacagccagagtgccgagcggctcgaacaggaactgaagttc
ttcgcgcccacgctgccggttctgcacttcccggactgggaaaccctgccctacgatctg
ttctcgccgcaccaggacatcatttcccagcgtatcgccagcctgtatcgcctgccggaa
ctggagcatggtgttctcgtagtaccgatcaccacggccctacacagactggcgccgact
aaattcctactgggcagcagcctggtactggacgtcggccagaagctcgatgtcgaggcc
atgcgcacccgtctggaagccagcggctatcgctacgtggacacggtctacgagcatggc
gagttcacggtacgcggcgcgctgatcgatctgttcccgatgggcagcaaggtgccttac
cgcatcgacctgttcgacgacgagatcgaaaccctgcgcaccttcgacccggacacgcag
cgttccatcgagaaggtcgaatcggtacgcctgctgcccgcacgtgaattcccgctgaag
aaagaagaagtcacccgcttcaaggcgcgcttccgcgagcgtttcgatgtcgatttccgg
cgcagtccgatttttcaggacttgagcagcggcatcacgcctgccggtatcgagtactac
atcccgctgttcttcgaggaaacctcgaccctgttcgactacctgccgcaggacactcag
gtgttctcgctgccgggcattgaacaggcggcggaaaacttctggaaagacgtgcgcaac
cgctacgaagagcggcgtgtagacccgtcgcgccccttgctaccacccgccgaactgttc
ctgccagtggaagactgtttcgcgcgcctgaaaaactggccgcgcgtcgttgccagccag
caggacatcgaagccggtggcgaacgctcgcgtttccccgcgcagagcctgccggatctg
gccattgaagccaaggcagtccagccgctggccgcgctgtcgaaattcctcgatgaattc
cccggtcgtgtgctgttcaccgctgaatcggcgggtcgccgggaagtgctgctggaattg
ctggagcgcctcaagctgcggccgaagacggtcgacagctggctcgatttcgtggacggc
aaggaccggctggcgatcaccatcgcgccgctggacgaaggcctgctgctggaagacccg
gcccttgcgctggttgccgagagcccgctgttcggccaacgcgtgatgcaacgccgtcgt
cgcgaaaaacgcaccgatggcggcaataacgacgcagtcatcaagaacctgaccgagctg
cgcgaaggcgcgccggtggtgcacatcgaccacggtgtcggacgctacctggggctggcc
acgctggaagtcgaaaatcaggtcgccgagttcctgatgctggcgtacgccgaggacgcc
aagctgtacgtcccggtcgccaacctgcacctgattgcacgctacaccggcagcgacgac
gaaatggcaccgctgcaccgtctgggttcggaaacctggcagaaagccaagcgcaaggcc
gccgagcaagtgcgcgatgtggccgccgagctgctcgacatctatgcccgccgcgccgcc
cgcgaaggctacgcgttcgccgatccgaaagccgattacgcgaccttcagcgcaggcttc
ccgttcgaagagacgccggatcagcagaccacgatcgaagccgtgcgcgccgacatgctc
gcgcccaaacccatggatcgtctggtctgcggcgacgtgggcttcggcaagaccgaagtc
gccatgcgcgccgcattcatcgccgttcacggcgggcgtcaggttgcgattctggtgccg
accaccctgctcgcccaacagcactacaacagtttccgcgaccgtttcgccgactggcca
gtgactgtcgaagtcatgagccgcttcaagtcggccaaggaagtcagcgccgccgtcgcc
gatctggccgaaggcaagatcgacatcgtcatcggcacgcacaagctgctgcaggacgac
gtgaagatcaagaatctggggctggtcatcatcgacgaagagcatcgattcggtgtccgt
cagaaagaacagctcaaggccctgcgcagcgaagtcgacattctgaccctgactgcaacg
cctattccgcgcacgctgaacatggccgtgtcgggcatgcgcgacctgtcgatcattgcc
acgccgccagcgcgcaggctgtcggtgcgcaccttcgtcatggagcagaacaatcccacg
atcaaggaagcactgttgcgcgagctgctgcgcggcggccaggtctactacctgcacaac
gacgtcaagaccatcgagaaatgcgccgccgacctcgccgaactggtgccggaagcgcgt
atcggcattggccacggccagatgcgcgagcgtgaactcgaacaggtgatgagcgacttc
taccacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtg
ccgagcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcgcaactgcac
cagttgcgcggccgtgtcggacgcagtcaccaccaggcctatgcctatctgctgacacca
ccacgcaagcaggtcacccgcgatgccgagaaacgtctggaagccatcgccaacacccag
gacctgggcgcaggcttcgtgcttgccaccaacgacctggaaatccgtggcgcgggcgaa
ctgctgggcgatggccagagcggccagatccaggccgtgggtttcaccctgtacatggaa
atgctcgaacgtgcggtgaagtcgattcgcaagggcgaacagcccaacctcgaccagccg
ctgggcggaggaccggaaatcaacctgcgcgtgcctgcgctgattcccgaggcctacctg
cccgatgtgcatacccgcctgattctctacaagcgcattgccaatgccgccgacgaggat
ggtttgaaggacctgcaggtcgagatgatcgaccgcttcggcctgttgccggagccgacc
aaggcgctggtgcggatcacgcaactcaaactgcgcgccgagcaactgggcattcgcaag
atcgacgccgggccgcaaggcgggcgcattgagtttgccgccgaaacgccggtcgacccg
ctgactctgatcaagctgatccagagccagcccaaccgttacaagttcgaaggcgccacg
ctgttcaaattcatggtgccgatggagcgcgcagatgagcgtttcaacacgatcgaagcg
ctgcttgagcgcctgaccccgacaactgcttga
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