Pseudomonas viridiflava: CFBP1590__3348
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Entry
CFBP1590__3348 CDS
T06554
Symbol
ligD
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pvd
Pseudomonas viridiflava
Pathway
pvd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CFBP1590__3348 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvd03400
]
CFBP1590__3348 (ligD)
Enzymes [BR:
pvd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CFBP1590__3348 (ligD)
DNA repair and recombination proteins [BR:
pvd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CFBP1590__3348 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
SMS10934
UniProt:
A0A1Y6JMC0
LinkDB
All DBs
Position
I:complement(3689207..3691807)
Genome browser
AA seq
866 aa
AA seq
DB search
MAKPVSEYTRKRNFDITSEPAEAGSKMRSAKAHALSFVIQKHDASHLHYDFRLELDGTLK
SWAVPKGPSLDPTQKRLAVHVEDHPLGYASFEGSIPKGQYGGGDVIVWDRGVWEPHGDPR
KTYAEGKLKFTLIGEKLTGDWALVRTRLKGSGSKEQWLLIKEKDSVARPADEYDIIEQQP
QSVISGAHVGVGRVPASKAKPRSTKTKTDTAPAKPSRMSSRTKAKAALPELLTPQLATLV
DAPPAGEWLYEIKFDGYRILTRIQGDDVRLFTRNGHDWTERLPELAKAIKALKLQDTWFD
GEVVVLNDQGLPDFQALQNAFEIGRSKDILYYLFDMPYLTGEDLREVPIEQRRDALKQVL
GKQRSRLLRFSDAFRSGHKDIVESASAMGLEGVIGKRAGSPYVSKRNADWIKLKCRLRQE
FVIVGYTAPQGSRSAFGALLLAVNDDDGLVYAGRVGTGFTSQTLKQLHDQLQPLERDTSP
LDKKLTSAQARGVQWVEPRLICEAEFAEWTREGILRQAAFVGLRSDKPASEVVREYPQPA
DIASRPKAAKSSKTKALEAPVARKTARGKVNVAGVGISHSDRVIDSKSGTQKIELAQFYE
SIADWILPYLNNRPVALLRCPEGIDGEQFFQKHSERLAIPHIRQLDRKLDPGHAALMEID
TVQALVGAAQMGAIEFHTWGATSDRIETPDHLVLDLDPDPALPWRSMIEATQMVLAVLEE
LGLEAFLKTSGGKGMHIIVPLARHADWDTVKGFAKAIAEFVTQQLPERFTATMGPKNRVG
RIFVDYLRNSRGGSTVTAYSVRARPGLPVSVPIALDELAGLTSSAQWDVTNLEQRLRELK
GDPWEGYRNRQRITQKMWKQLGAKRS
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcctgtcagcgaatacacgcgcaaacgcaacttcgacatcacctcggagcct
gccgaggcgggcagtaaaatgcgctcggcaaaggctcatgcgttgagcttcgtcattcag
aagcacgacgcgagccacctgcattacgatttccgtcttgagctggacggcacgctcaaa
agctgggcggtgcccaaggggccgagccttgatccgacccagaaacgcctggcggtgcat
gtcgaggatcacccgctgggttacgccagtttcgaaggcagcattcccaaggggcagtat
ggcggtggcgacgtcattgtctgggaccgtggcgtctgggagccccatggcgacccgcgc
aagacctacgctgagggcaaactcaagttcacgctgatcggcgaaaagctcaccggtgac
tgggcactggtgcgtacccggctcaagggcagcggcagcaaggagcagtggctgctgatc
aaggaaaaggattcggtcgcccggcctgccgacgaatacgacatcatcgagcaacagccg
cagagcgtgatcagcggtgcgcatgtcggcgtcggacgggttccggcatcgaaggccaaa
ccccggtcgacaaagaccaaaaccgatacggcaccggccaaaccttcccgcatgtcttcc
cgcaccaaggcaaaggccgcgcttcccgaattgcttaccccgcaactcgctacattggtg
gacgcgccccctgcgggtgaatggctgtacgaaatcaagttcgacggctatcgcatcctg
acgcgtattcagggcgatgacgtgcggctttttacgcgcaacggccacgactggaccgag
cggctgcccgagctggccaaggcgatcaaggcgctgaaactgcaggacacctggttcgat
ggcgaagtcgtggtgctcaacgaccaggggctgccggattttcaggcgttgcagaatgcc
tttgaaatcggtcgcagcaaggacattctctattacctgttcgacatgccgtatctgact
ggtgaggacctgcgtgaggtgcccatcgagcagcgccgcgatgcgctcaaacaggtgctc
ggtaaacagcgcagccgtctgttgcgtttctccgatgcgtttcgttcggggcacaaggac
atcgtcgaaagcgccagcgcgatggggctggagggcgtgatcggtaagcgggccggcagt
ccgtatgtcagcaagcgcaacgccgactggatcaagctcaaatgtcggctgcgtcaggag
ttcgtgattgtcggttacaccgcgccgcagggcagtcgctcggcgttcggcgccttgctg
ctggcggtcaatgatgatgacggtctggtctatgcagggcgggtcggcaccggtttcacc
agtcagaccctcaaacagttgcacgatcagttgcagccgctggagcgcgatacctcgccg
ctcgacaagaagctcacctcggcacaggcgcggggtgtgcagtgggtagaaccgcgactg
atctgcgaggccgaattcgcggagtggacgcgggaaggcattctgcgtcaggcagctttc
gtaggattgcgcagcgacaaacccgccagtgaggtggtgcgtgagtaccctcagccagcc
gacattgccagccgccccaaagctgcaaaaagctccaagacaaaagctttagaggctccc
gttgcacgcaagacggcgcgaggcaaggtgaacgtcgcgggtgtcggcatcagccattcg
gaccgggtgatcgacagcaagagcggcacgcagaagatcgaactggcccagttttatgaa
tcgattgccgactggatcctgccgtatctgaacaatcgtcccgtcgcgctgctgcgctgc
cccgagggtatcgacggcgagcagttctttcagaagcactccgagcgcctggcgatcccc
catatccggcaactggatcgaaagcttgatccgggccatgccgcgctgatggaaatcgac
acggttcaggctctggtcggcgccgcgcaaatgggcgccatcgagtttcatacctggggg
gcgaccagtgatcgcatcgaaacgcctgaccatctggtgctcgaccttgacccggatccg
gccttgccctggcgcagcatgatcgaagccacacaaatggtgctggcggtgcttgaagaa
ctcgggcttgaggcctttctgaaaaccagcggcggcaaaggcatgcacatcattgtgccg
ctcgcccggcacgctgattgggatacggtcaaaggcttcgccaaagccatcgccgagttc
gtgacccaacagctgcccgagcgtttcaccgccaccatgggcccgaaaaaccgcgtcggc
cgcattttcgtcgactaccttcgcaacagccgtggcggcagcacggtcaccgcctattcg
gttcgtgcccggcccgggcttcccgtttcggtgccgatagcgctcgatgaactggcgggc
cttacgtcttcggctcaatgggacgtcaccaatctggagcaacgtctgcgtgaattgaaa
ggcgatccgtgggagggttaccgtaaccggcagagaatcacgcaaaagatgtggaagcag
ttgggggccaagcggtcctga
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