Paracoccus versutus: E3U25_04240
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Entry
E3U25_04240 CDS
T09188
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pver
Paracoccus versutus
Pathway
pver03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pver00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E3U25_04240 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pver03400
]
E3U25_04240 (ligD)
Enzymes [BR:
pver01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E3U25_04240 (ligD)
DNA repair and recombination proteins [BR:
pver03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E3U25_04240 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WGR55235
LinkDB
All DBs
Position
pBEN:complement(873072..875615)
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AA seq
847 aa
AA seq
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MALETYRKKRDFAATPEPKGGRIRKGGDAFVVQKHAATRLHYDFRLELDGVLKSWAVAKG
PSLVPGEKRLAVHVEDHPLEYGDFEGTIPKGEYGGGTVILWDRGTWTPVGDPHQGYAKGH
LEFTLHGEKLHGRWHLVRMRGKPREKRENWLLIKGEDEFARTKDAPDILEERPESVKTGR
QIADVAGEAPGWSSKTGRIRKPAGRAKKPRAAPEPDPEPPEPAAVKGARKAAMPGFVEPM
LATLASAAPQGERWLHEIKFDGYRLQARIEAGRVKLLTRSGLDWTTRFGKAVPAALRDLP
VGAAILDGELVVETDAGASDFSALQADLSAGRSDRFAFYAFDLLYLDGYDLCRVPLVERK
ALLGRLLSQEGGILRFSSHFDEGGALVLRHACRLSLEGIVSKLRDGPYRAGRGRAWIKSK
CSARQEFVVAGYVPSSVSRRAIGSLILGVYENGGLQHVGRVGTGFSAAVAEDLFRRLERM
RIPDSPFAQRLTTDEARQARYVRPELVAEVEFRAWTADGHLRHAAFRGLREDKPAAEIVR
ETAQPAAKPPAPQRRRVRLTHPDRLYWPEEGVTKEGLADYHAEVWRWIAPWITGRPLALL
RCPNGIDGERFFQKHAWKGLNPHISLLRDPKEPQGEPLIGIEDLDGLMGLVQSAALEIHP
WGATAADWERPDMITMDLDPGEGVAWPLVVEAARELRRRLEDHGLAGFVKTSGGKGLHVV
APLRPQAEWPAVKAFTKALADAMAADDPGRYVSTISKARRRGRILIDYLRNQRGATAVAA
YSTRARPGAAVSAPLRWDELDAGIGPAWFTLQNMPTRLATLGSDPWDGFRAAAAPLEAPR
SRRRKAG
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggagacctatcgcaagaaacgcgatttcgccgcgacgccggaacccaagggc
gggcgcatccgcaagggcggcgacgccttcgtggtccagaaacatgcggcgacgcggctg
cattacgatttccggctggagctggacggggtgctgaaaagctgggccgtcgccaagggg
cccagcctggtgcccggcgaaaagcgcctggcggtgcatgtcgaggaccacccgctggaa
tatggcgatttcgagggcaccatccccaagggcgaatatggcggcggcaccgtcatcctg
tgggaccgcggcacctggacgccggtcggcgatccgcatcagggctatgccaagggccat
ctggaattcacccttcatggcgaaaagctgcatggccgctggcatctggtccgcatgcgc
ggcaagccgcgggaaaagcgcgagaactggctgctgatcaagggcgaggacgaattcgcc
cggacaaaggacgcgcccgacatcctggaagagcggccggaatcggtcaagaccggccgg
cagatcgccgatgtcgcgggcgaggcgccgggctggtcctcgaagaccgggcgcatccgc
aagccggccgggcgggcgaaaaagccgagggccgcgccggagccggaccccgagccgccc
gaaccggcggcggtcaagggcgcgcgcaaggcggcgatgccgggtttcgtcgagccgatg
ctggccacgctggcctcggccgccccgcagggcgaacgctggctgcacgagatcaagttc
gacggctaccgcctgcaagcgcggatcgaggcgggacgggtcaagcttctgacccgcagc
gggctggactggacgacgcgcttcggcaaggccgtgcccgccgccctgcgcgacctgccg
gtgggcgcggccatcctggatggcgaattggtggtcgagaccgatgccggcgcctcggat
ttctcggccctgcaggcagatctcagcgccgggcggtccgaccgcttcgccttctacgcc
ttcgacctgctttatctggacggatacgacctgtgcagggtgccgctggtcgagcgcaag
gcgctgctcggccggcttctgagccaggaaggcggcatcctgcggttcagcagccatttc
gacgaaggcggcgcgctggtcctgcgccatgcctgccggctgagcctcgaggggatcgtg
tcgaagctgcgcgacgggccctatcgcgccgggcgcggccgggcctggatcaagtcgaaa
tgctcggcccggcaggaattcgtggtggcgggctatgtcccctcgtcggtgtcgcgccgc
gccatcggctcgctgatcctgggcgtttacgagaatggcggcttgcagcatgtcggccgc
gtcggcaccggcttttccgccgccgtggccgaggatctgttccgccggctggagcggatg
cgcatccccgacagtccctttgcccaacgcctgaccaccgacgaggcgcggcaggcccgc
tatgtccgccccgaactggtggccgaggtcgagttccgcgcctggaccgccgacggccac
ctgcgccacgccgccttccgcggcctgcgcgaggacaagcccgcggccgagatcgtgcgc
gaaaccgcgcagcctgccgcgaaacccccggcgccgcagcggcggcgggtgcggctgacc
catcccgaccggctctattggcccgaggaaggcgtgaccaaggaagggctggccgattac
catgccgaggtctggcgctggatcgcgccctggatcaccggccggccgctggcgctgctg
cgctgcccgaacggcatcgacggcgagcggttcttccagaagcacgcctggaaggggctg
aacccgcatatctcgctgctgcgcgatcccaaggagccgcagggcgagccgctgatcggc
atcgaggatctggacgggctgatggggctggtgcaatcggccgcgctggagatccacccc
tggggcgcgaccgccgccgattgggaacggccggacatgatcaccatggacctcgacccc
ggcgaaggcgtcgcctggccgctggtggtcgaggcggcgcgggagttgcgccggcggctc
gaggatcacggccttgccggtttcgtcaagacctcgggcggcaaggggctgcatgtggtc
gcgcccctgcgcccgcaggcggaatggccggcggtcaaggccttcaccaaggcgctggcc
gatgccatggctgccgacgatcccggccgctatgtctcgaccatcagcaaggcgcggcgg
cggggcaggatcctgatcgactatctgcgcaaccagcgcggcgcgacggccgtcgccgcc
tattccacccgcgcccggcccggcgccgccgtctcggccccgctgcgctgggacgagctg
gacgccggcatcggcccggcctggttcaccctgcagaacatgccgacgcggctggccacg
ctgggctcggacccctgggacggctttcgcgccgccgccgcaccgctcgaggcaccgcgc
agccgccgccggaaggcaggctag
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