Panicum virgatum (switchgrass): 120641062
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Entry
120641062 CDS
T07260
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120641062
03015 mRNA surveillance pathway
120641062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120641062
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120641062
mRNA cycle factors
P-body specific factors
120641062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
120641062
NCBI-ProteinID:
XP_039772957
LinkDB
All DBs
Position
7K:complement(32994378..33001866)
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AA seq
503 aa
AA seq
DB search
MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWACFRPGNASQKNHRYSRLYLNF
KHPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPSQQVPKNIKKDGREGTIVKDPEYLEF
LELISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTALMMFVRQQRAAKSMAQRPGSRVS
RKVSGVVTSSSSPSKRSSEKRRSSAYVVRESAKEKPTYIMVPKREEHTQREKAVAGSSDV
AIGGTSAPGQTVEAKRDKIVILKGRGRVDSNIPDAATQQSSTSVKNVPPSSSRQDQRLEA
SGRIIKTILSNKETRSSNTSQHEQEGHMLNTERDKRPPRVLNPRTMVKDQIVENAERSHF
DEKPNHIHGSAPVGEKIERHARNRDRPDRGVWAPRRYDKSTSGGGSHASSSEFPQMQSHP
GDNFSQLADGHGDRKTDTRSHGGGRGGPVENGHRHANRRGPPRGPKETEISANMPDGKNS
KRSSASHGAHERQVWVQKSSSGS
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccggctcaccgcaccaaggtggtgctccggcggctgccgccggcgatcgcc
cagcaggccgtcgtggaccaggtcgacgcgcgcttcgccgggcggtacgactgggcgtgc
ttccgccccggcaatgccagccaaaagaatcatagatattctcgactctaccttaacttc
aagcacccagaggatgttgttgagtttgctgaggtcttcaatggacatgtatttgtgaat
gaaaagggtgctcaatttaaagctcttgtggaatatgcaccatcgcaacaggttcccaaa
aatatcaagaaggatggccgtgaaggaactattgtgaaagatccggaatacttagagttt
cttgagcttatttcaaagcctactgagcatctgccaagtgctgaaattcagctcgaaagg
aaagaagctgaaagggcagctgctggaaaggaggcacctgttgtgacagctcttatgatg
tttgttcgtcagcaacgggcagctaagagtatggctcagagacctggaagtagagttagc
agaaaagtttcaggtgttgtaactagcagttccagtccttctaaaaggtcttctgagaag
cgcaggtcctctgcgtatgttgtacgtgaaagtgctaaggagaaaccaacttatatcatg
gtgccgaagagagaagagcatacacagagggaaaaagctgttgctggaagttcagatgtc
gcaattgggggaacatctgcacctggtcagactgtcgaggctaaaagggacaaaattgtc
attttgaaaggcagaggaagggttgattctaatatacctgatgccgcaacccagcagtca
tcaacctctgtgaagaatgtgccaccatcgagttctagacaagaccagcgactcgaggcc
agtggtagaattattaagactatactttcaaacaaggaaacccgcagttcaaatacatct
caacatgaacaggaaggtcacatgcttaacactgagagggataagaggccaccaagggtt
ctcaacccacgtaccatggtgaaagatcagatagttgaaaatgctgagagaagtcatttt
gatgagaagcctaatcatatccatggctctgctcctgttggtgagaagattgaaaggcat
gctagaaacagagataggcctgatcgtggtgtttgggctcctcgccgctatgacaagtct
acatctggaggtggttcacatgcctcatcatcggagttccctcaaatgcagtcgcatcct
ggagataatttctcgcaactagcagatggtcatggagacagaaagacagacacaaggagt
catggtggtggccgtggcggtcctgttgaaaatgggcataggcatgccaaccgtcgtggt
cctccacgtggtccaaaggaaactgaaatatctgctaacatgcctgatggaaagaattca
aagaggagctctgctagccatggtgctcatgagagacaagtatgggttcagaagtcaagt
tcaggctcgtga
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