Panicum virgatum (switchgrass): 120641596
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Entry
120641596 CDS
T07260
Name
(RefSeq) DNA replication ATP-dependent helicase/nuclease JHS1-like isoform X1
KO
K10742
DNA replication ATP-dependent helicase/nuclease Dna2 [EC:
5.6.2.3
3.1.-.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120641596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120641596
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120641596
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
120641596
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
120641596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dna2
AAA_12
AAA_11
AAA_30
AAA_19
PDDEXK_1
UvrD-helicase
Cas_Cas4
Dna2_Rift
ResIII
PhoH
nSTAND3
SLFN-g3_helicase
PRIMA1
Motif
Other DBs
NCBI-GeneID:
120641596
NCBI-ProteinID:
XP_039773708
LinkDB
All DBs
Position
7K:45064817..45077939
Genome browser
AA seq
1283 aa
AA seq
DB search
MPPKKRAAASKKPPSSQPSQPAKFGILHFFERQTQASQNAKRQKPDPPPAPPPPPPPPPP
EEEPSEVSPEVTKALASKRVRFSPGMLIKQSQDDGAAEVVTWQISPVNHRLGTAKSRQFL
GVSLHPCSNNEKNSSLEAMKKWHSSPSGLSRCTASGRNSGVIGSALAGCDGVEDSQSPFR
TPPSLSYGCSEQLNGGATSEGGLEPLGAGQHKKALLDLLDQVEDVIMEEELPVDTGNKGG
KATNVDNTNNNCSSVADGGLTIPSEKTADAPPLDSFLVLEVSEKHKTDDSACDRYPVKVL
RLLNEHSGKECAVHLLDEWFHSLVGPGDTVNVIGEFSDQGKCIVDHDNNLVIVHPELLIS
GTRVASSFHCPRRSVLDDRLKSNEYSTSALIGTLLHQVFQAGLLEGAPSQQFLELQAKEV
LIKNIESLYACEVNESNLYSTLIEAIPKILNWLKCFLKGSKCSSVDFGHTEGRKTVGVIE
VMDIEEMAWAPRYGLKGMIDASVISKVDSCNSGSHNKIMPLEFKTGKGTSGQTAMEHSAQ
VILYTLLMTERYLSKDIDLGLLYYLHTDQTLGIKVKRSDLIGLIMRRNELAAEILKASIS
QSFPPMLQSPSTCNGCRHLNSCAIYHKAHGGNAATSGLGDLFDNLVNHLTVVHHDFLKQW
DRLIDLEARASQGKKKNIFQSYHSNSGSGDRTPSYFALDIKNGHLIDSSGKSKRYIYNFV
YHKMQPDTIDQSDTQFDSLDFSLKCGDPVVLSTQSGRIAVANGSIRDISRSHITVSLPRR
LRIPDSNSSSEPEDLKREIWRIDKDEFSSSFAIMRLNLVQLFAQNPQKSYLRNLIVDLEA
PRFDSGGMFSQDLALSYIRSLPNLNNDQQRSLHKILGAKDYALILGMPGTGKTYTMVHAV
KSLLIRGESILLTSYTNSAIDTLLMKLKTEGVGFIRIGRHEAVHPDVRDHCLSTAEVQSV
DAIKARMDQVQVVGVTCLGIYHPLLAHKKFDTCIMDEAGQITLPVSLGPLMLATKFVLVG
DHYQLPPLVQSSEARENGMGVSLFWRLSEAHPQAISALLCQYRMSSGIMELSNSLIYGNR
LCCGSLEIANAKLKFSGRETVQLKLKEILNPDRAVIFANTDQIPALEAKDHRTVNNPTEA
HIISWITKELLRRGVPQDDIGIITPYNAQVNLIQQCTDGLIEVHTIDKYQGRDKECIIVS
FVRSTANSRASGASLLGDWHRINVLLTRAKKKLIMVGSRGTLSTIPLLRLLVDKVAEIGG
LLDLTNNDVHSLRELRGSSLNAQ
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atgcctccgaagaagcgcgccgccgcttcaaagaagccgccgtcgtcgcagccatcgcag
cccgccaagttcggcatcctccacttcttcgagcgccagacccaggcctcccagaacgcc
aagcgccagaagcccgacccccctccggccccgcctcctcctcctccgccgccgccgcct
gaggaggagccgtcggaggtctcgccagaggtcaccaaggcgctggcatccaagcgggtc
aggttttctcccggaatgttgattaagcagagccaggacgatggggccgcggaggtggtg
acttggcagatctcgccggtgaaccatcgcctgggtacggcgaagtcgaggcaatttctt
ggggtgtcgcttcatccgtgctcaaacaacgagaaaaattcctcgctcgaggctatgaag
aagtggcattcatctccatcgggattgtcgaggtgtactgcttcagggcgtaattcaggc
gttattggatctgctctagctggctgtgatggtgttgaggattctcagagcccatttcgg
actccaccatcgctttcctatggttgcagtgagcagttgaacggcggtgccacttctgag
ggaggacttgaaccattgggagcagggcagcacaaaaaggcattacttgatcttttagat
caagttgaggatgttattatggaagaagaattgcctgttgatacaggaaataaaggaggg
aaagccacaaatgtggataataccaacaataattgctcttctgttgctgatggtggttta
actatcccatctgagaaaactgctgatgccccacccttggatagttttcttgtattggag
gtgtcagaaaaacataaaactgatgattcagcatgtgatcgctatcctgttaaggtcctg
cgccttttgaatgaacactctgggaaagaatgtgccgtgcatttgcttgatgagtggttc
catagtcttgttgggcctggtgatactgtgaatgtcattggagaatttagtgatcaagga
aaatgtattgttgatcatgacaacaatcttgttatcgtccatccagagttactcatttct
gggacacgggttgcttccagcttccattgtcctagaagatctgtactggatgacagactg
aaaagcaatgaatattcaaccagtgccttgattggtactcttcttcatcaagtatttcag
gctgggctacttgagggtgctccttcacagcaattcttggaactgcaagcaaaagaagtt
cttataaaaaacattgagagtttatatgcgtgtgaagtcaatgaaagcaacctgtactcc
acgcttattgaagcaatccctaagatattaaactggctcaaatgctttttaaagggttca
aaatgctccagtgttgattttggacatactgaagggagaaagactgttggggtgattgag
gtgatggatattgaggaaatggcatgggccccaagatatggtttgaaagggatgatcgat
gcttctgtaatatcaaaggttgactcatgcaacagtggctcacataataaaataatgcca
ctagagttcaaaactggtaaaggaactagtggtcagacagctatggaacactctgctcag
gtgatattgtacacactattgatgacagagagatatttgagtaaagatatagacttgggt
cttttgtattatcttcacacagaccagacattgggaatcaaagtaaagaggtccgattta
attgggctaataatgcgccgcaacgagcttgccgcagagatcctgaaggcatcaatttca
caaagttttcctccaatgttacagagcccatcaacttgtaatgggtgtcgacacctgaac
tcttgtgccatataccacaaggcacatggaggcaatgctgcaactagtgggcttggtgat
ctatttgacaaccttgtgaatcacttgacagtcgtgcatcatgactttcttaaacaatgg
gacagattgattgatctcgaagctagagcttctcagggcaaaaagaagaatatcttccag
tcctatcattcaaattctggaagtggggatcgcacaccatcttattttgcccttgacata
aaaaatgggcatttgatagattcttcaggaaaaagcaaaagatacatatacaattttgtt
taccataagatgcagcccgacacaattgatcagtcagatactcaatttgacagcctagat
ttcagcctcaaatgtggtgatcctgtggtgcttagcactcaatctgggagaatagcagtt
gccaatggatccataagagacatcagtcgctcccatataacggtctctttaccacgccgt
ctgagaattccagatagtaattcctcgtctgagccagaagacctcaaacgtgaaatttgg
cggatagacaaagatgaatttagttcttcatttgccataatgagactcaaccttgtccaa
ctatttgctcagaatccacaaaaatcttacctacggaatttgattgttgatcttgaggct
cccaggtttgatagtggagggatgtttagccaagatctcgcactatcatacatacggtca
ctgccaaatttgaacaatgaccaacaaagatcattgcataaaattctaggagcaaaggat
tatgctctaatattaggaatgcctggaacaggcaaaacatatacaatggtgcatgctgtg
aagtcattattgataagaggagaatctattttgctaacttcatatactaattcggctatt
gatactctgctcatgaagttgaagactgagggtgtaggttttattcggattggtaggcat
gaagctgtacatcctgatgtcagggatcactgcttgtcaacagctgaggtacaatcagta
gatgcgattaaagcaaggatggatcaagtgcaggttgttggagttacttgtttgggaata
taccatcccttattagcacacaagaagtttgacacatgtatcatggatgaagctggacaa
atcacattaccggtatcactgggaccattgatgcttgcaactaagtttgttctagtagga
gaccattaccaacttcctccacttgtccagagctctgaagctcgagaaaatgggatgggc
gttagcctattttggaggttatcagaagcacatcctcaagcaatctctgcactgctgtgc
cagtatcgcatgtcatccggtatcatggagctgtcgaattcattgatttacggcaatagg
ttgtgctgtggttcattggaaattgcaaatgccaaactcaagttttctggtagagaaaca
gtgcaattgaagttgaaagagatcttgaaccctgatagggctgtcatctttgccaacaca
gatcaaatcccagcacttgaggcaaaggatcacagaactgtgaacaatcccacagaagca
cacataatttcttggatcaccaaagaattgctaaggagaggtgtacctcaagatgatatt
ggtatcataaccccatacaacgcccaagtgaatctcatccagcaatgcactgatggtttg
attgaggttcacacaatagataaataccagggtagggataaggaatgtataatagtatct
tttgtgcgctccactgcaaattccagggctagtggtgcttcgttgcttggtgattggcac
aggatcaatgttctattgacacgtgcaaagaaaaagctcatcatggttggatcacgtgga
acactttcgacgatacctttgctgaggcttcttgttgacaaggtagctgagattggtggt
ctgttggacttgacaaataatgatgtgcattctcttcgagaacttagaggttctagtttg
aacgcacaatag
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