Panicum virgatum (switchgrass): 120641695
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Entry
120641695 CDS
T07260
Name
(RefSeq) putative DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120641695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120641695
Enzymes [BR:
pvir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120641695
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120641695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
Ribonuclease_3
Motif
Other DBs
NCBI-GeneID:
120641695
NCBI-ProteinID:
XP_039773828
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All DBs
Position
7K:complement(46478101..46499323)
Genome browser
AA seq
1215 aa
AA seq
DB search
MAAKVRFGLLVAMFQAMSGDKRSAKKRARLSAFLDRAYVPSGGRDDFFSALRLVLPGLDR
ERGTYGLKEAALAAVLVDALGIAKDSPDAVRLINWRRGGGGRNAGNFALVAAEVLQRRQG
ITSGGLTIKEVNDALDRLAATENRSEKAAILSSLIKKTNALEMKWLLMIILKDLKLGISE
KSIFDEFHPDAQDLFNVTCDLKFVCEKLNDRSQRHKRQDIEVGKAVRPQLAMRVRDASAA
WKKLHGKQVVAECKFDGDRIQIHKNGEEIHFFSRSFLDHSEYAPGMSKIIKENILVDRCI
LDGEMLVWDTVLNRFAEFGSNQEIAKAAREGLETDRQQYIDVAFDILYAGDTSVIHQSLT
ERQEILQKVVKPLKGHLELLIPTGGLNVHRPSDEPCWSIIAHNLEDVEKFFKDTIDNRDE
GIILKDLDSKWEPGDRNGKWLKLKPDYIHAGADLDVIIIGGYYGSGRRGGEVAQFLVGLA
VPSDDNSYPKRFLSFCRVGTGLSDEERDALVTKLKPYFRKNEYPQKPPKFYEVTNNSKER
PDVWIDSPDKSVIMSVTSDIRTIKSEVFAAPYCLRFPRIQRVRYDKPWHECLDVQAFVDI
VHSSNGTTQRAADDNSLENDNTKRSRTTKKGEKKKKSASIIPSHLMKTDVSGLKGETLIF
ANMIFYFVNIPSSYNLEYFHKLVVENGGSFSMNLNDSVTHCIAAEKKGIKYQAAIRQGRI
IHYDWILDCCKEKRPLHLQPKYILFLADFARHKFPEEIDSYADYYYWDIDIADLKQIFSN
IDKVADDSNMVSQYKKKHCIDERFCFFQGCCVYFHNTPLVNADYNVISGIALKWMKQGLT
MRGGQVCSSIASATHLVLISVLQTYNFDILYKSFPPAERRYLHDKRLHVVSNKWLEDSVE
KQMKLSETAYNLKPDTLEELEIERSEETVHPLGHKFEEHKEVERANVKYAPRKRSRAASS
SRAAKAAPRPIRRTRARRGNQQAKIGDDVESEESVPDKCQGDQNMDTDYISNEIGKGISN
KEQRPSQAASRPVPRTRARRGNQHAKIDDGESEESRPCETGKEDQKLNADYISKTEADNS
EKDQGPPPAAQFVTLMEQEPEGVKSNTMEEKQGSPFHQRTSAAEVTSSVPGEKIEQMVDP
LHAMLLDMIPTLSTTRSQGATRVPPEVLTYTSKNSDIPVTDAGTSGVPAPDPNAAPPKKK
KVSYKDVASELLKDW
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaaggtgcggttcggcctcctggtggcgatgttccaggccatgtcgggcgac
aagaggtcggcgaagaagcgcgcccgcctcagcgctttcctcgaccgggcctacgtcccc
agcggcggtagggatgacttcttcagcgcgctgcgcctcgtcctcccggggctcgaccgc
gagcgcggcacctacgggcttaaggaagccgccctcgccgccgtgcttgtcgacgccctg
ggcatcgccaaggactcccccgacgccgtccggctcatcaactggcgccgcggcgggggt
ggacgcaacgccggcaacttcgcgcttgtcgcagctgaggtcttgcagcggaggcaaggt
ataacgtctggtggattgacaataaaggaggtcaatgatgcacttgatcgtttagctgca
actgagaacaggtctgagaaggccgcaattctttctagtctgatcaagaaaaccaatgcc
cttgaaatgaagtggcttctgatgattattcttaaagatttgaagttggggataagtgag
aagagcatatttgatgaatttcatcctgatgcccaagacttgttcaatgtcacttgtgac
ttgaaattcgtctgtgagaagctcaatgatcgaagccaaaggcataaacgccaggatata
gaagttgggaaggctgtcaggcctcagctagctatgcgagtccgtgatgcttcagctgct
tggaagaagcttcacggaaaacaagtggttgctgagtgcaaattcgatggtgaccgtatt
caaattcacaaaaatggggaagagattcatttcttctctaggagctttcttgatcattct
gaatacgcacctgggatgtcaaagattattaaggaaaatatcctggttgacaggtgtata
ttggatggagaaatgcttgtctgggacactgtgcttaaccgttttgctgaatttggttca
aaccaggaaatagctaaggccgcaagggaggggctggagactgatcgacagcaatatata
gatgttgctttcgacatcctttatgctggagataccagtgttatccaccaaagcttgaca
gagcggcaagaaattctacagaaggttgtgaaacctttaaagggtcatctcgagcttttg
atcccaacaggtggtctaaatgtccatcggccttcagatgaaccgtgctggtccattatt
gcacataatcttgaagatgttgagaaattcttcaaagatactatcgataacagagacgag
ggcattatactgaaggaccttgattccaaatgggagcctggtgatcgaaatggaaagtgg
cttaaactaaagcctgattatatacacgctggtgctgatcttgatgttattattatagga
ggatactatggatctggacgtcgaggaggagaggttgcacagtttttagttggccttgca
gtgccttcagatgataacagttatcccaaaagatttctttccttttgccgggttggcact
ggcctctctgatgaagagcgtgatgctcttgtcaccaaactgaagccttatttcaggaaa
aatgagtacccccaaaaacctcccaaattttatgaagttacaaataactcaaaggagagg
ccagatgtttggatagatagccctgataagtcagtcataatgtctgtgacaagtgacatt
cgtacaatcaagtccgaggtatttgctgctccatactgtttgagattcccccgtattcag
agagtgagatatgataagccatggcatgagtgccttgatgttcaggcatttgtggacatt
gtgcattcaagtaatggaacaacacaaagggcggcagatgataacagcctggagaatgat
aacacaaaacgttcaagaacaaccaaaaaaggggagaagaagaagaagagtgcctcaatc
atcccttcacatttaatgaagactgatgtatcaggtctcaagggagaaacgctgatattt
gcaaacatgattttctattttgtcaacattccatcatcatataatctcgaatattttcat
aaactagttgtggaaaatgggggatctttctccatgaatctgaatgactctgttactcac
tgcatagctgcggagaagaaaggtatcaagtatcaagcagccatacgtcagggaaggatc
attcactatgactggatattggactgttgcaaggaaaaacgtcctcttcatttgcaacct
aagtatatactttttcttgctgattttgccaggcacaaatttcctgaagagattgattca
tatgctgactattactactgggacattgatattgctgacctcaagcagattttcagtaac
atcgacaaagttgctgatgattcgaatatggtcagtcagtacaaaaagaagcattgcata
gacgagagattctgcttcttccagggttgctgtgtctacttccataatacacccttagtg
aatgcggactacaatgtaatatctggtattgccctgaagtggatgaagcagggtctaaca
atgcgtggtggtcaagtctgcagcagcattgcttcagcaactcatttggttctaatttca
gttttacagacatacaactttgacatcctgtacaagagcttccctcctgctgaaagacgt
tacctacatgacaaaagattgcatgttgtcagtaataagtggttggaagattcagtggag
aaacaaatgaagctgtctgaaactgcttacaaccttaaaccagatacactagaagagcta
gaaattgaaaggagtgaggaaactgttcaccctctgggtcataagtttgaggaacacaag
gaggttgaaagagcaaacgtcaaatatgccccaaggaaaaggagcagggcagccagtagt
tcaagggctgcaaaagctgctcctagaccaatccggcgaacaagggcaagaagaggaaac
cagcaagcaaaaataggcgatgatgttgaatcggaagaaagtgttcctgataaatgtcaa
ggtgatcaaaatatggacacggactacatctctaatgagattggaaaaggtatcagcaac
aaagagcaacgaccgtcccaagctgcttccagaccagtcccgagaacaagggctaggaga
ggaaatcagcatgcaaagatagatgatggagaatctgaagaaagcaggccttgtgaaaca
ggtaaagaagatcaaaagttgaatgcggattacatctctaagacggaagcagataacagt
gagaaagaccagggaccacctccagctgcccagtttgtcactttgatggagcaagaaccc
gaaggtgtcaaatcgaacaccatggaggagaaacaaggcagtcctttccaccaaagaaca
agtgctgctgaagtgacgagcagtgtgccgggtgagaagatagaacagatggtagatccg
ttgcacgcaatgcttctggatatgataccaaccctgagcacgacaaggtcacaaggtgca
accagggtgccacctgaggtattaacttacacatccaaaaattctgatattccggtgaca
gatgcaggaacctccggggttccagcgccagacccgaatgcagctcctccaaagaagaaa
aaggtcagttacaaagatgttgctagtgagcttctcaaagattggtga
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integrated database retrieval system
