Panicum virgatum (switchgrass): 120642138
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Entry
120642138 CDS
T07260
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120642138
09124 Replication and repair
03420 Nucleotide excision repair
120642138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120642138
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120642138
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120642138
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120642138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
120642138
NCBI-ProteinID:
XP_039774486
LinkDB
All DBs
Position
7K:51881746..51888943
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AA seq
451 aa
AA seq
DB search
MPQVMVVARNFMDMVAALPASKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVLAPVTA
AAMEEWVLNEYAAKHRVAIDKLLQLRVFVEVRDRRKEVSYKMNQKFQSNMQKYLVDGGSL
PREPIPLSVTGRLPASADLEAYALDQWECFLLQLINSSQVEKGTSFSSSMMKTFQRGLLS
SRDGEAPKLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHKLGA
AYSLNTLTDVQRIAIRDLAELGLVKLQQGRKDSWFIPTQLATNLSASLSDSSSSKEGFVV
VETNFRMYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESIYGAFENGITAEQIISFL
KQNAHPRVADKIPAVPENVTDQIRLWETDLNRVEMIPSHLYEDFPSKEWFEQCCDHARDH
GYLLWEDSKRMRLIVRGEFHPEMREFLRRQR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggtaatggtggtggcgcggaacttcatggatatggtggctgcgctgcctgcc
tccaagcttgatatgctctatgactcggccttcatctgtgaggctgtactcaggtcactc
ccaccattggcaaagaaatatgcactgcagatgctgtacgtgttggcaccggtgaccgct
gcagctatggaagagtgggtgctcaatgaatatgctgccaagcatagggttgccattgat
aagctgctccaactcagggtcttcgttgaagtgcgcgatagacgaaaggaggtgagctac
aagatgaatcaaaagttccagagtaacatgcagaagtatttggttgacggtggaagttta
ccaagggaaccgataccattaagtgttactggtagattgcctgcatcagcagatctggaa
gcctatgctcttgatcaatgggagtgcttcttgttgcaattgatcaattcatctcaagtt
gaaaaagggacgagtttcagctcctccatgatgaagacatttcagcgtggccttctgagt
tcaagggatggtgaagctccaaagttgactgagaatggcttccaatttcttctgatggaa
acaaatgcacaactttggtacataatgagagaatacatttcctctgcagaggaacgtgga
gtggatcctacggagctgatatcatttctcttggaacttagttttcataaattgggagcg
gcttatagtttgaacactctgactgatgtccaaagaattgccatcagggatcttgcagag
ttgggattagtcaagctgcagcagggtcgaaaggatagctggttcattcccacccaattg
gcaacaaatctctcagcaagcttgtcagattcatcgtctagcaaagagggctttgtggtt
gtggagacaaactttagaatgtatgcatactctacttccaaattgcactgtgagattctg
cgccttttctcaagggtggaatatcaacttccaaacctcatcgtgggagctattacaaaa
gaaagtatttatggtgcttttgagaatggaataactgctgaacagataatttcatttctc
aagcaaaacgctcaccctcgtgttgccgacaagatacctgctgtcccggagaatgtcaca
gatcagattaggctgtgggaaactgatctcaacagggttgagatgattccatcacattta
tatgaagattttcctagcaaggaatggtttgaacaatgctgtgatcatgcaagggatcat
ggatacttgctctgggaggactcgaagaggatgaggctaattgtgcgaggggagttccac
cctgaaatgagggagttcctccgcaggcaaagatga
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