Panicum virgatum (switchgrass): 120642288
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Entry
120642288 CDS
T07260
Name
(RefSeq) ABC transporter B family member 19-like
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120642288
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120642288
04147 Exosome [BR:
pvir04147
]
120642288
04090 CD molecules [BR:
pvir04090
]
120642288
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120642288
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120642288
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120642288
CD molecules [BR:
pvir04090
]
Proteins
120642288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_29
AAA_22
AAA_16
ABC_ATPase
Zeta_toxin
AAA_21
DUF87
AAA_15
Glyco_transf_22
Motif
Other DBs
NCBI-GeneID:
120642288
NCBI-ProteinID:
XP_039774679
LinkDB
All DBs
Position
7K:complement(35065728..35072601)
Genome browser
AA seq
1261 aa
AA seq
DB search
MAEDAGKAEAGSCSGGGGGGCEAVKKRPEQSVAFHELFGFADPLDWLLMAAGSAGAVVHG
AAMPVFFLLFGELVNGFGKNQHNLRRMTDEVSKYSLYFIYLGLVVCASSYLEIACWMYTG
ERQVGALRRRYLEAVLRQDVGFFDTDARTGDVVFSVSTDTLLVQDAIGEKVGNFIHYLAT
FLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRDSYANAGIIAEQAIA
QVRTVYSYVGETKALNSYSEAIQNTLKLGYKAGMAKGLGIGCTYGIACMSWALVFWYAGV
FIRNGQTDGGKAFTAIFSAIVGGLSLGQSFSNLGAFSKGKIAGYKLLEVIRQRPTIVQDT
ADGRCLDEVHGNIEFKEVAFSYPSRPDVMIFRDFSLFFPAGKTAAVVGGSGSGKSTVVAL
IERFYDPNQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATMAE
VEAAATSANAHSFIALLPNGYNTHVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATS
ALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRCVDMIAVIQQGQVVETGTHDELLAKG
SSGAYAALIRFQETARNRACPSTRKSRSSRLSNSLSTRSLSLRSGSLRNLSYSYSTGADG
RIEMVSNADNDRKYPAPRGYFFKLLKLNAPEWPYTILGAIGSILSGFIGPTFAIVMSNMI
EVFYYRNPSKMESKTREYVFIYIGTGLYAVVAYLVQHYFFSIMGENLTTRVRRMMLAVIL
RNDVGWFDQEENNSTLVAARLATDAADVKSAIAERISVILQNMTSLLVSFVVGFIIEWRV
ALLILVTFPLLVLANFAQQLSMKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKVL
SLFCVELRVPQAHSLRRSQVSGALFGLSQLALYASEALILWFGAHLVRARASTFSRVIKV
FVVLVITANSVAETVSLAPEIARGGESIRSVFAILNSRTRIDPDDPDAEPVEAVRGDIDL
RHVDFAYPTRPDVMVFKDFSLRIRAGQSQALVGASGSGKSTVIALIERFYDPLAGKVMLD
GKDIRRLNLRSLCRRIGLVQQEPVLFAASIMENIAYGREDGATEEEVVEAAKAANVHGFV
SALPDGYRTPVGERGVQLSGGQKQRIAIARAVLKDPAVLLLDEATSALDAESECVLQEAL
ERIMKGRTAVLVAHRLSTIRGVDSIAVVQDGRVVEQGTHGDLVSRPDGAYSRLLQLQLHH
G
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggacgcggggaaggcggaggccgggagctgcagcggcggcggcggcggcggg
tgcgaggcggtgaagaagcggccggagcagagcgtggcgttccacgagctgttcgggttc
gcggacccgctggactggctgctcatggcggccgggagcgccggcgccgtggtgcacggc
gccgccatgcccgtcttcttcctcctcttcggcgagctcgtcaacggcttcggcaagaac
cagcacaacctccgccgcatgacggacgaggtgtccaagtactcgctctacttcatctac
ctcggcctcgtcgtctgcgcctcctcgtacctggagatcgcgtgctggatgtacacgggt
gaacgccaggtgggcgcgctgcggcggcgctacctggaggccgtgctgcggcaggacgtg
ggcttcttcgacaccgacgcgcgcaccggcgacgtcgtcttcagcgtgtccacggacacg
ctcctcgtccaggacgccattggcgagaaggtcggcaacttcatccactacctcgcgacg
ttcctggccgggctggtcgtcgggttcgtctcggcgtggcggctggcgctgctcagcatc
gccgtcatcccgggcatcgccttcgccggcgggctgtacgcgtacacgctcaccggcctc
acctccaagagccgggactcgtacgccaatgccgggatcatagccgagcaggccatcgcc
caggtgaggacggtctactcttatgtgggggagacaaaggccctgaattcgtactcggag
gcgattcagaacacactgaagctggggtacaaggccgggatggccaaggggcttggcatt
ggctgcacctacggaattgcttgtatgtcctgggcactggtgttctggtatgccggcgtg
ttcatccggaatggtcagactgatggagggaaggccttcactgcaattttctcagcaatc
gtcggcggcctgagcctggggcaatcattttcaaatcttggagcattcagcaaagggaag
attgccggctacaagctgctggaagtgataaggcagaggccaactatagttcaggacacg
gcagatggaaggtgcctggatgaagttcatggcaacatagaattcaaggaagtggccttc
agctatccttcccgcccggatgtcatgattttccgtgacttttctctcttcttccccgct
ggaaaaactgcagcagttgttgggggcagtggctctggaaagagcactgttgttgctctc
atcgagcggttttatgatcctaatcaagggcaagttttgctggacaatgtggacatcaag
acgctgcaattgaagtggctcagggatcaaattggtttggtgaatcaagagcctgcactt
tttgcaactacaattcttgagaatattctttatggcaagcctgatgctacaatggccgag
gttgaggctgctgctacttcagctaatgcccatagcttcattgctctgcttcctaatggc
tacaacactcatgtgggtgagaggggacttcagctctctggtggtcagaagcaacgtatt
gccattgctcgggcaatgctgaagaatccaaagattctgctcctagatgaggccaccagt
gcgcttgatgctggttcagagagtattgttcaagaagcccttgatcgcttgatggtcggc
aggactactgttgtggttgcacacaggttatcaaccataaggtgtgttgacatgatcgcc
gtgatccagcaagggcaggttgtggagaccggtactcatgatgagctccttgccaaggga
agctcgggagcttacgctgctcttataaggttccaagagacggccagaaaccgtgcatgc
ccatcaacccgcaagtcccggtcgtcccgcttgagcaactccctgtccactcggtcattg
agcctcaggtcaggaagcttgaggaatctgagctactcatacagcacgggcgccgacggt
cgcattgagatggtttccaacgccgacaacgaccggaagtacccagcgccaaggggttac
ttcttcaaactcctcaagctgaacgcaccggagtggccctacaccatactgggcgccatt
gggtccatcctgtctgggtttatcggcccgacattcgccatcgtgatgagcaacatgatc
gaggtgttctactaccggaaccccagcaagatggagagcaagaccagggagtacgtgttc
atctacatcggcaccgggctgtatgccgtcgtcgcctacctcgtccagcactacttcttc
agcatcatgggcgagaacctgaccacccgggtgcggaggatgatgctcgccgtgatcttg
aggaacgatgtgggatggttcgaccaggaggagaacaactcgaccctcgtggcggcccgg
ctcgccaccgacgccgcggacgtgaagtccgccatcgccgagcggatatcggtgatcctg
cagaacatgacctccctcctggtgtccttcgtggtcggcttcatcatcgagtggcgggtc
gccctcctcatccttgtcaccttccccctcctcgtcctcgccaacttcgcccagcaactg
tcgatgaagggcttcgcgggggacacggccaaggcgcacgccaagacgagcatgatcgcc
ggggagggcgtgagcaacatccgcacggtggcggccttcaacgcgcaggacaaggtcctg
tccctcttctgcgtcgagctgcgcgtcccgcaggcgcacagcctccgccgcagccaggtc
tcgggcgcgctcttcggcctctcccagctcgccctctacgcctccgaggcgctcatcctc
tggttcggcgcgcacctcgtccgcgcccgcgcctccaccttctcccgggtcatcaaggtc
ttcgtcgtcctcgtcatcaccgccaactccgtcgccgagaccgtcagcctcgcgccggag
atcgcgcgcggcggggagtccatccgctccgtcttcgccatcctcaacagccggacgcgc
atcgacccggacgacccggacgcggagccggtggaggcagtgcgcggcgacatcgacctc
cggcacgtcgacttcgcgtacccgacgcgccccgacgtgatggtgttcaaggatttcagc
ctgcggatccgggccgggcagagccaggcgctggtcggcgcgagcgggtccgggaagagc
accgtcatcgccctcatcgagcgcttctacgacccgctcgccggcaaggtgatgctcgac
ggcaaggacatccggcggctgaacctccggtccctgtgccgccgcatcgggctggtgcag
caggagcccgtgctgttcgccgccagcatcatggagaacatcgcctacggccgggaggac
ggcgcgacggaggaggaggtcgtggaggccgccaaggccgccaacgtgcacggcttcgtc
agcgcgctgcccgacgggtaccgcacccccgtcggggagcgcggcgtgcagctgtccggc
gggcagaagcagcgcatcgccatcgcgcgcgcggtgctcaaggaccccgccgtgctgctg
ctggacgaggccaccagcgcgctggacgccgagtccgagtgcgtgctgcaagaggcgctg
gagcgcatcatgaagggccgcaccgccgtgctggtggcgcaccggctctccaccatccgc
ggcgtcgactccatcgccgtcgtgcaggacggccgcgtggtggagcaggggacgcacggg
gacctcgtgtcccgccccgacggcgcctactcgcggctgctgcagctgcagctgcaccac
ggctga
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