Panicum virgatum (switchgrass): 120642449
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Entry
120642449 CDS
T07260
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120642449
09124 Replication and repair
03420 Nucleotide excision repair
120642449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120642449
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120642449
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120642449
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120642449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
IBR
Motif
Other DBs
NCBI-GeneID:
120642449
NCBI-ProteinID:
XP_039774907
LinkDB
All DBs
Position
7K:complement(39018445..39023857)
Genome browser
AA seq
431 aa
AA seq
DB search
MYGVGGEGGFNAPSTTSGGRRRNLGDEEDDEEEEGGEGRVLEAWERAYADDRSWETLQED
ESGLLHPIDTKTLVHAQYRRRLLLRSAAAAAARIQKGLIRYLYIVIDLSRAASEMDYRPS
RMAVVAKHAEAFIREFFDQNPLSHVGLVTIKDGISHRLTDIGGSPESQIKALMGKLECSG
DSSLQNALELVHGYLDQVPSYGHKEVLILYSALNTCDPGDIMETIEKCKKSKIRCSVIGL
AAEIFICKHLCEETGGSYMVALDESHFKELLLEHAPPPPAIAEYAAANLIKMGFPQRGAE
DLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFPVAP
FDEVSSVPNRIRRGVQNCFGCQQNLFNPDGQTSLHVRCPKCNQHFCLDCDIYIHESLHNC
PGCESQRGFSS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcgtcggcggcgagggcggcttcaacgcgccctccaccacctccggcggccgg
cgccgcaacctgggcgacgaagaggatgacgaggaggaggagggcggcgagggccgcgtc
ctcgaggcgtgggagcgcgcgtacgcggacgaccgctcgtgggagacgctgcaggaagac
gagtcggggcttctccaccccatcgataccaagaccctcgtccacgctcagtaccggcgc
cgcctcctgctccgctctgccgccgccgccgcggcccgcatccagaaggggctcatccgc
tacctctacatcgtcatcgacctctcccgggcagcttcggagatggattatcgtcccagt
cgaatggctgttgttgcaaaacatgctgaggcttttataagagaattcttcgaccagaat
cccttgagccatgttggcctagtgacaattaaagacggtatttctcatcgactgacagac
attggagggagtccagaatcacagattaaggctctgatggggaaacttgagtgttctggt
gattcatctctgcagaatgctttagaacttgtccacggttatttagatcaagtaccatca
tatggtcacaaggaagtcttaattttgtactctgccctaaatacgtgtgatcctggtgat
atcatggagaccatagaaaaatgtaagaaatccaaaattagatgctcagttattggtctt
gctgcggagatcttcatttgtaaacatctctgtgaagagactggcggatcctacatggtt
gcactagacgagtctcatttcaaagaattgttgctggaacatgctcccccaccccctgca
atagcagaatatgccgcagctaatttgattaagatgggctttccacagaggggtgctgag
gatcttatctctatctgctcttgtcacaagaaaataaagtctggggctgaaggttacata
tgtcctcgatgcaaagttaatgtgtgtgagcttccaacagaatgtcgaacttgtggccta
acactagttagttctccacacttggcaaggtcatatcatcatctcttcccggtagcaccg
tttgatgaggtttcatctgtcccaaatagaatccgaaggggagtacaaaactgtttcggc
tgtcagcagaacctttttaaccctgatggccaaactagtctccatgttcgctgcccaaaa
tgcaaccagcacttctgcctggattgtgatatttacatccatgagagcttgcacaattgc
cctggttgtgagagtcaacgtggtttctcatcatag
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