Panicum virgatum (switchgrass): 120643355
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Entry
120643355 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
pvir04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120643355
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120643355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120643355
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120643355
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120643355
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
120643355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
zf-C3HC4_2
zf-C3HC4
WD40_like
zf-C3HC4_3
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_5
zf-rbx1
U-box
Motif
Other DBs
NCBI-GeneID:
120643355
NCBI-ProteinID:
XP_039775642
LinkDB
All DBs
Position
1K:complement(52832976..52839365)
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AA seq
687 aa
AA seq
DB search
MGDSSVAGALVPSVPKPEAAPSGDASAAALALAEEAGTRAASASPQGPAEEGEGPADRDL
LCPICMAVIKDAFLTACGHSFCYMCIVTHLSHKSDCPCCGHYLTKAQLYPNFLLDKVLKK
ISARQIAKTASPIDQFQYALQQGNEMGVKELDSLMTLISEKKRQMEQQESETNMQILLVF
LHCLRKQKLEELNEIQTDLQYIKEDIGAVERHRLELYRTKERYSMKLRMLLDDPAAQKMW
PSPIDKASSLFLPNSRTPLSASCPGSLQNKKLDLKAQVSHQGFQRRDALTCSDPPNSPIQ
SGNIIARKRRVQAQFNELQEYYLQRRRTGAQARRQEERDIVAMNREGYHAGLQDFQSVLT
TFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSKRIKVFEFSSVVNEPS
DVHCPAVEMATRSKLSCLSWNKYSKNVIASSDYEGIVTVWDVQTRQSVMEYEEHEKRAWS
VDFSRTEPSMLVSGSDDCKVKVWCTKQEASVINIDMKANICSVKYNPGSSFYVAVGSADH
HIHYFDLRNPSAPVHVFGGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDHCPVRTFRG
HKNEKNFVGLSVNSEYIACGSETNEVFVYHKAISKPAASHRFVSSDLGDAEDDPGSYFIS
AVCWKSDSPTMLTANSQGTIKVLVLAP
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgggcgactcctcggtggccggcgcgctcgtgccgtccgtgcccaagccggaggccgcg
ccgtccggtgacgcctccgcggcggcgctggcgctggcggaggaggcgggcacgcgcgcg
gcgtcggcgtccccgcagggcccggcggaggagggggagggacccgccgacagggacctc
ctctgcccgatctgcatggcggtcatcaaggacgccttcctcaccgcctgcggccacagc
ttctgctacatgtgcatcgtcacgcacctcagccacaagagcgactgcccctgctgcggg
cactacctcaccaaggcccagctctaccccaatttcctcctcgacaaggttctgaagaaa
atttcggcccggcaaattgctaaaacagcatcaccaatcgatcaatttcaatatgcattg
caacagggaaacgaaatgggggttaaagagttagatagtcttatgactttgatttctgag
aagaagcggcaaatggaacaacaagaatcagagacaaatatgcaaatattgttagtcttc
ttgcactgccttagaaagcaaaagctggaagagttgaatgagattcaaactgatctacag
tacatcaaagaagatataggcgctgtggagagacataggttagaattgtatcgcacaaaa
gaaaggtactccatgaagctgcgcatgcttttggatgatcctgctgcacaaaaaatgtgg
ccctctcctatagacaaagctagcagtctctttcttcccaattctcggacaccacttagc
gcatcatgcccaggaagtttacagaataagaagcttgatttgaaagctcaagtaagccac
caaggatttcaaaggagagacgctctaacttgttcagaccctccaaactcccctatacaa
tcgggtaacatcattgctaggaagaggagagttcaagcacagtttaatgagcttcaagaa
tactacctgcaaagacggcgcactggagcacaggcacgcaggcaagaagaaagagacatt
gttgcaatgaacagagaaggttatcatgcaggtcttcaggatttccagtctgtgctaaca
acattcactcgatacagtcgtctacgtgtcatcgcggaactaaggcatggagacttgttt
cactctgccaatattgtatcaagcattgaatttgatcgtgatgatgaactattcgctact
gctggcgtctcgaagcgtattaaagtttttgaattttctagtgttgttaatgagccatca
gatgtgcattgcccggctgttgaaatggctacgagatctaaacttagttgcctcagctgg
aacaagtactcaaaaaatgttatcgcaagcagtgactatgagggtattgtaactgtttgg
gatgtccagacccgtcagagtgtgatggagtatgaagagcatgagaagagagcgtggagc
gttgatttttctcgtacagaaccttcaatgctagtatcagggagtgatgattgcaaggtg
aaagtgtggtgcacaaaacaagaagcaagcgtgatcaatattgatatgaaagcaaatatt
tgctcagttaaatataatcctgggtcaagcttctatgttgcagtcggatctgctgatcac
catattcattactttgatttacgtaatccaagtgcacctgtccatgtttttggtgggcac
aagaaggcagtatcgtatgttaaattcttatctaacaatgagcttgcgtctgcatcaaca
gatagcacattacggttatgggatgtcaaggatcattgcccggtacggacgtttagaggg
cacaaaaatgaaaagaactttgttgggttgtctgtgaacagtgagtatattgcttgtgga
agtgaaacaaatgaggtttttgtttatcacaaggcaatctcaaaacctgcagcgagccat
agatttgtatcctctgacctgggcgatgctgaggatgatcctggttcttatttcattagt
gctgtctgctggaagagtgatagccctaccatgttaactgctaacagccagggaacgatt
aaagttcttgtacttgctccttga
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