Panicum virgatum (switchgrass): 120648981
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Entry
120648981 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120648981
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120648981
Enzymes [BR:
pvir01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
120648981
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
120648981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltransf_29
Wyosine_form
Flavodoxin_1
Radical_SAM
Methyltransf_11
Methyltransf_25
Methyltransf_31
Flavodoxin_5
Motif
Other DBs
NCBI-GeneID:
120648981
NCBI-ProteinID:
XP_039781531
LinkDB
All DBs
Position
9K:complement(5353232..5366129)
Genome browser
AA seq
1441 aa
AA seq
DB search
MTVARGPPGRPSSALLGCWRRRPPLGFGAKVGIAIALGLSFAIIWTSVSPTSSSQQISTE
RSSFAAEVAAPPTASHNRTSSSADGGHAHRKPRPVPHSHKKRHPAPSGSHAHPRRANATA
SPDAAAAKADHSEPAPITDTEPKEKEPEQEQEPDMEMEPEQEAELPMPEESGDNSGKAPA
EGEEEKPPQLELEEEPGEGDGDEDFEGAKKKAPSKKRKLPPLFSSSAHYHWKHCGAKSGY
HYIPCVDFDGDGSQRHHERSCPRSPVTCLVSLPKDYKQPAPWPERKDKVWYGNVAHPRLS
NYVKGHNWLNHSGDYLMFPPDEWEFKGGARHYVESIDEMAPDIDWGKNIRIILDIGCKSA
GFGIALLEKDVITLSLGLTNDQTDLAQVALERGIPATVGSLGSRRLPFPSGAFDAIHCGE
CNIPWHSNGGKLLLEINRILRPGGYFIISSKSADLESEEGISASMTALCWNAISYSSDDV
SEVGVKIFQRPATNEEYDLRAKKDPPFCKEEQNKANAWYTHIKHCLHKAPVGIEERGSDW
PEEWPKRLESYPEWLGDLQTRVATDHNHWKAVVEKSYLDGLGIDWSNIRNVMDMRAVYGG
FAAALASKKVWVMNVVPVHAADTLPIIYERGLVGIYHDWCEPFSTYPRSYDLLHADHLFS
RLKIRCRQPVAIVVEMDRILRPGGWAIIRDKLEILDPLETILKSLHWEIIMTFRKDKEGI
MSVKKTTWRILQPLHKNSTYDQASKFESAQIHVSAFFLDEVWPVYHGPKASFQNPKNPRA
EPAPPTSTAAAMPPFPTATTASATSHLALLFLLSSSSLFFLYKSIRLRRKPSPATGPART
TIPTLLYASATGTSKTLAARLSARLTADVGVPVSATDAASFDPEDLPSVPLLLLLVPTHD
GGAPPPSAAFLSRWLEESAADFRAGALLLSGLRFAVFGVGSRAYGETFNAAARSLSRWLR
ALGAVEVVPVGEGDVDGGDLEAVFEEWSGKVLRVVKGEELNEGVEGESDGLDELELEEEE
SDVDDEEEAVPGEIDMEDIAGKAPARRQNGKVEGGLANGGQNGVKEMVTPIIRASLEKQG
YKILGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHT
NPVGKSWKWKMDDPLDIVNAAVDQHTKMVKQMKGVPGVKPEKLEEGLSPRHCALSLVGEP
IMYPEINALVDELHRRRISTFLVTNAQFPEKIKMLKPITQLYVSVDAATKESLKAVDRPL
FSDFWERFLDSLKSLHEKDQRTVYRLTLVKGWNAEEIDAYAKLLNLGQPDFIEIKGVTYC
GSSATSKLTMENVPWHSDVKEFSEVLASKSGGVYEVACEHAHSCCVLLAKVDKFKINGKW
HTWIDYDRFHELVISGKPFKSQDYMAVTPSWAVYGAEEGGFDPDQSRFKKERRHGTAAVK
G
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atgacggtggcccgcggcccgcccggccgcccctcctccgcgctcctgggctgctggcgc
cgccgtcccccgctgggcttcggcgccaaggtcggcatcgccatcgcgctcggcctctcc
ttcgccatcatctggacctccgtctccccgacctcctcctcccagcagatctccaccgag
cgatcctccttcgccgccgaagttgccgctccaccaaccgcctcccacaatcgtaccagc
tccagcgccgacggcgggcatgctcaccggaagcctcgccccgtcccgcacagccacaag
aagcgccatcctgctccgtccggatctcatgcccatccccgtcgcgccaatgccaccgcc
tcgccggatgccgccgctgcaaaggccgatcactccgagccggctccaataaccgacaca
gagcctaaggagaaggagccggaacaggagcaggagccagacatggagatggagccggag
caggaggcagagctgcctatgcccgaggaaagcggggacaactcggggaaggcgcctgca
gagggggaggaggagaagccgccgcagctggaattggaagaggagcccggtgagggtgat
ggcgacgaggattttgagggggcgaagaagaaggctccgagtaagaagagaaagcttccg
cctttgttcagctctagtgcgcattaccactggaagcattgcggtgccaagagtggctac
cactatatcccttgcgtggatttcgatggggatgggagccagagacaccatgaacgcagc
tgcccaaggtcgcctgtgacatgcctggtgtcacttcccaaggattataaacagcctgca
ccatggccggagaggaaggacaaggtttggtatgggaatgttgcacatcctagattgtca
aattatgttaagggccacaactggctgaaccacagtggtgactacttgatgttcccacca
gatgaatgggagttcaaaggtggagcaagacattatgtggaatcaattgatgagatggct
cctgacattgactggggaaaaaatattcgtataatattggacatcggatgcaaaagtgct
ggctttggtattgctctacttgagaaagatgtgataacgctatctttaggccttacaaat
gatcaaacagaccttgcgcaagttgcccttgaacgtggaatacctgcaacagttggtagt
ctcggatcacgaagattgcccttccctagtggtgcatttgatgctatacactgtggtgaa
tgcaatataccatggcattctaatggtggaaaactcctcctagagataaatagaattctt
cgcccaggaggatacttcattatatcaagcaaaagtgctgacctagagagtgaggaagga
atatcagcttcaatgaccgcactttgttggaatgcaatatcttacagtagtgatgatgtc
agtgaggttggagtaaagatatttcagcgaccagccacaaatgaggaatatgatctgaga
gcaaaaaaagatcctccattttgtaaggaagagcagaacaaagctaatgcatggtatact
cacatcaagcattgcctgcacaaagcacctgttggtattgaagaaagaggtagtgactgg
ccagaggagtggcccaagaggcttgagagttacccggagtggctaggggacttgcaaaca
agagtggctactgatcataaccactggaaggctgttgttgagaaatcatatctggatgga
ttgggcattgactggtcaaatatcagaaatgtaatggatatgagggctgtatatggagga
tttgcagctgcattggcatctaaaaaggtttgggtcatgaatgtcgttcctgtgcatgct
gcagacaccctgcccataatctatgagcgtggcctggttggcatctatcatgattggtgt
gagccatttagcacgtatccaaggtcctatgatcttttacatgccgaccatttattctca
cgcttgaagatcagatgtaggcaacctgtcgctattgttgttgagatggatcgaattttg
aggcctggaggttgggccatcatcagggataaacttgagatccttgacccgttggagacc
attttgaagtcactacactgggaaattatcatgacattcagaaaggacaaggagggtatc
atgtctgtaaagaaaacaacatggcggatactgcagcctttgcacaagaattccacctac
gatcaagcatccaagttcgaatcggcacaaattcacgtttctgcatttttcttggatgaa
gtttggcccgtctaccacggcccaaaggcgagtttccaaaaccccaaaaacccgagggcc
gaaccggcacctcccacaagcaccgccgccgcgatgcctcccttcccgacggcgaccacc
gcctccgccacctcccacctcgcccttcttttcctcctctcctcctcctccctcttcttc
ctctacaaatctatccgcctccgccgcaaaccttcccccgccaccggccccgcccgcacc
accatcccaacgctcctctacgcctccgccaccgggacctccaagaccctcgccgcgcgc
ctctccgcccgactgaccgccgacgtcggagtccctgtaagcgccactgatgccgcctcc
ttcgaccccgaagacctcccctccgtcccgctcctcctcctcctcgtccccacccacgac
ggtggcgcgccgccaccctccgcggccttcctatctcgctggctcgaggagtccgccgcc
gatttccgagcgggggcgctcctgctgtccggtcttcgcttcgctgtattcggggtcggg
tcccgggcctatggagagaccttcaacgccgccgcgaggagcttatcgcggtggctgcgc
gcgctcggcgccgttgaggtggtccccgtcggggagggcgatgtggatggtggggacctc
gaggcggtgttcgaggagtggagtgggaaggtattgagggtcgtgaagggggaggagttg
aacgagggggttgagggagagagcgacgggcttgatgagttggaattggaagaagaggag
tctgatgttgacgatgaagaggaggcagtgcctggggagattgacatggaagacattgct
gggaaggcgccggcaaggaggcagaatgggaaggtggagggtggtttggctaatggaggg
cagaacggcgtgaaggagatggttacaccaatcatcagggcgagcttagagaaacagggt
tacaaaattcttggttctcatagtggcgtgaagatttgtagatggactaagtcacagctc
cgaggccgtggagggtgttataagcattcattttatggcatagagagtcacagatgcatg
gaggcaactccaagtttggcttgtgcaaataaatgtgtattttgttggagacatcacaca
aatcctgttggaaaaagttggaaatggaagatggatgacccacttgacattgtaaatgcc
gcagttgatcaacacactaagatggttaagcaaatgaaaggtgtaccaggagtaaagccg
gaaaaactagaagagggtctatcacctaggcattgcgcattatctctggttggtgaacca
ataatgtaccctgagataaatgctctggttgatgagctacaccgcaggcgcatatctacg
tttctggttacaaatgctcaatttcctgaaaagattaagatgttgaaaccaatcactcag
ctgtatgtcagtgtggatgcagctacaaaagaaagcttgaaggctgttgacaggccactg
ttttcagacttttgggagcgtttcctggattcactcaagtctctgcatgagaaagatcaa
cggacagtttaccgactgacgctggttaagggctggaatgcagaagagatagatgcatat
gcaaaattgctgaaccttggccaacctgatttcatcgaaatcaagggtgtgacatattgt
ggctcgtctgcaacttcaaagttgacaatggagaatgtaccctggcactctgatgtaaag
gaattctccgaggttttggcatcgaaaagcggcggtgtctacgaagtagcatgtgagcat
gctcattcatgctgtgtcctacttgcaaaagtagataagttcaagatcaacggcaaatgg
catacctggatagattatgaccgattccatgaactggtgatatctggaaagccttttaag
agccaagattacatggcagtgacgccctcatgggcagtctatggtgcagaggaaggtggg
ttcgatccggatcaatctcgtttcaagaaggaaaggcgccatggaactgctgcggtcaaa
ggttga
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