Panicum virgatum (switchgrass): 120649522
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Entry
120649522 CDS
T07260
Name
(RefSeq) trafficking protein particle complex subunit 8-like isoform X1
KO
K20305
trafficking protein particle complex subunit 8
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120649522
Membrane trafficking [BR:
pvir04131
]
Endosome - Golgi transport
Tethering complex
TRAPP complex II
120649522
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAPPC-Trs85
TRAPPC9-Trs120
SNAP
Motif
Other DBs
NCBI-GeneID:
120649522
NCBI-ProteinID:
XP_039782275
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Position
9K:complement(4650574..4663869)
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AA seq
1276 aa
AA seq
DB search
MDPLRGYLGRLLLEEITPVVMVLTTPLAEATCRKSGLSFIDMLSPFSLFKKIDVPVRTAS
EVPYRLQMFKIRMVYASDVRKEDYEVADQRIKPVVSEANEKALPDLLSDPPQLEDVLGKP
EAELCPLWIKKFNRELMRTLLFSEHETFDHPVACLLVVSSMDKEPISKFVDLFNTNQLPS
LLNEGIMDPQILKHYLVLHDQQEGPQDIAVNVLAEMRSTLGLNDCKLLCINSSTEADGSN
PDNLWLPYKALGLENHEGTCFLSTDDVNEIKDFMQDFASNHIIPYMEQKIRVLNQQVATT
RKGFRNQIKNLWWRKRDEVPEAPNGPMYTFTSIESQIRVLGDFAFMLRDYELALSNYRLL
ATDYKLDKAWKRFAGVQEMSGLCYFMLDQSRKDAEYCMESAFSTYLRIGSSGQRNATRCG
LWWAEMLKTRGQYREASSVYFRVSNEEPSLHSAVLLEQAASCYLLSSPPMLRKYGFHLIL
AGNSYYMSDQKQHAVRAYRNALFVYKQNPWSYINDHVHFNVGRWYGVLGILDVAIKHLLE
VIACSHQSLITQNMFLSDFFHYVQSMGKKFDVYKLQLPVFNMSSLRVIHEDHRTYASDAD
VDVSEGTWQDLEEELIPSSSVVRTNWLDTQPKSSLRKYKDSCVCVAGEAVKVNLELKNPL
QIPVDVSGISLICQLSTNMDALSSDISGLTLGGEDKVNTEPSISILETDEDNFIVSKLDI
ILGGGESKIVQLDVTPKVEGILKLVGIRWTLSNSVVGYQYFEFGAQKKNKKGKRGCRRSF
NNSLVVIKGLPKLTGSIDRMPTKAFAGDLQLLKLNLRNHSEYAVKGIKMKISNPRFLIPG
DSPDIGLEFPHCLKKHTQSEVDLVPYKCTKENFKGLLFAFPQDSEIQAGATVSWPIWFHA
ATPGNVSLYISLYYEMESSSDIKYRTLRMHYDLEVLPSLDISFAISMSSSILQEYIVRMD
VMNKTPTESFVLHQLSCVGSKWAVSALSSCNSISSVETVSANQAVSCFFKIKDFEADSCK
EAESGSYRSDMALYPGSNGDVFDIARSPLADFHFQERYRQGKLEKVPCSLLDFVLISKAT
GNSSKPSPDLQLLSHHICHCSALSQSPIWWLMEGPRTITHDFSKSCCEVSIQLVIHNSAA
HKSSVRVVTSDVMREKNQTVHPHDSTSVQGGWHDVSLENDIKAISSAKGTRHEKQSSKSI
SPYVWCSLSTAQIELQPDSCSRVPLKVCIFAPGTYNFSNYELQWKVLPSKEAQVDENGSS
GGGPGHPFYVTVLQSV
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggatccgctccggggctacttggggcggctcctcctcgaagagatcaccccggtggtg
atggtgctgacaacaccgctcgccgaggccacctgccgaaagagcggcctcagcttcatc
gacatgctttccccgttctcgctcttcaaaaaaatcgacgtgccagtgcggacggcgagc
gaggtgccgtacagactgcagatgtttaagattcgtatggtttacgcgtccgacgtccgg
aaggaggactacgaggtggcagaccagcggattaagccggtggtttctgaggccaacgag
aaggctcttccggatttgctttcagacccaccgcagcttgaagatgtacttggaaagccc
gaagctgagttgtgcccattgtggattaagaagttcaatagagagctaatgcgaacacta
ttgttttcggagcatgagacatttgaccatcccgtggcatgtcttctggttgtgtcgtca
atggacaaagaacccatcagcaaatttgttgatcttttcaacacaaatcagttgccttct
cttttaaatgaaggcataatggatccacaaattttgaagcattatctcgtacttcatgac
cagcaagaggggccgcaagacatagctgtgaacgtcttagctgaaatgaggagtaccctt
ggtttgaacgactgtaaattattatgtataaattcgtctacagaagcagatggtagtaat
cctgacaatttgtggctaccttataaagctcttggtttggagaatcatgaagggacctgt
ttccttagcacggatgatgtgaatgagataaaggacttcatgcaagattttgcttctaat
catatcatcccctacatggagcaaaagatacgcgtcctgaatcagcaggtagcaacaaca
agaaagggttttagaaatcaaatcaagaatttgtggtggagaaagagagatgaagtccca
gaagctccaaatgggccaatgtatacattcacctccatagaatcacagatcagagttctg
ggtgattttgccttcatgttacgagactacgagcttgctttgtcaaattacagattactc
gctacagattataagcttgataaggcttggaagcggtttgctggtgtgcaggagatgagt
ggactctgctatttcatgctggatcagtcaaggaaggatgccgagtattgcatggaaagt
gccttcagtacatatctgagaattggatcttctgggcagagaaatgctactagatgtggc
ctttggtgggcagaaatgcttaaaacaagagggcagtacagggaggcatcaagtgtgtac
ttccgtgtttctaatgaggaaccttctttacattctgccgtcctgcttgagcaagctgct
tcttgctacttattatccagtccacctatgcttcggaagtatggatttcacctaatctta
gctgggaatagctactacatgtctgatcagaaacaacatgctgttcgggcatacagaaat
gctctgtttgtttacaaacaaaacccttggagttacattaacgatcatgtacactttaat
gttggaaggtggtatggagttcttggtatacttgatgtagccatcaagcacttgctggag
gtcattgcttgtagccatcagtcgctgattacacaaaatatgttcctcagcgattttttc
cattatgttcagagcatggggaagaaattcgatgtatacaagcttcaacttcctgttttt
aacatgtcatcgctcagagttatacatgaagatcatcggacctatgcatcagatgcagat
gttgatgttagtgaaggcacttggcaggacctggaggaagaattgatcccatcatcatca
gttgtcagaactaactggctggatactcagccgaaatcctctttgagaaaatacaaggat
tcctgtgtttgtgtggctggagaagctgtaaaagtgaaccttgagcttaagaatcctctg
caaattcctgttgatgtttctggcatctctcttatatgccaactttccaccaatatggat
gctttaagttctgatataagtgggttgaccttgggtggtgaagataaggttaacacagag
ccatctatctcaatattggagactgatgaagataatttcatagtgtcaaagcttgacatc
atattaggaggaggtgaaagtaaaatagtgcaacttgatgttactccaaaagttgaaggt
atcctgaagttggttgggataaggtggacactttcaaattcagtagtaggttatcaatac
tttgaatttggtgcccaaaagaaaaacaagaaaggaaaaagaggatgtcgtcgttctttc
aacaacagcctggttgtaatcaagggtttaccaaaactcacaggatctattgatcgcatg
ccgacaaaagcatttgccggtgatttacagctgctcaagctaaatctgagaaaccattca
gaatatgctgtgaagggcataaaaatgaagatcagcaacccaagatttttaattcctggt
gattcaccggacattggccttgagttcccacactgcttaaaaaaacacacgcaatcagaa
gtcgatcttgtaccatataaatgcacgaaggaaaatttcaagggtttgctctttgcattt
cctcaggatagtgaaattcaagcaggtgcaacagtctcttggcctatttggtttcatgct
gcaactcccggaaatgtttctctttatatatccctatattatgaaatggagagttccagt
gatataaaataccgtacactccgcatgcattacgatcttgaggttttgccatctcttgac
atatcctttgctataagtatgtcctcatcaatattgcaagagtatattgttcgcatggat
gtaatgaacaagaccccaacagagtcatttgtacttcatcagttgtcatgtgttggcagt
aaatgggcagtttcagcgttgtcttcatgcaattcgatcagctctgttgaaacagtatca
gcaaatcaggctgtatcatgcttcttcaagattaaggatttcgaggctgattcatgtaaa
gaggcagaaagcggttcctacagaagtgatatggctttatatccagggagcaacggagat
gtgtttgacattgctcggtctcctttagctgattttcactttcaagaaagatacaggcaa
ggaaagttagaaaaggtgccatgcagccttcttgattttgttctaatttcgaaggcaact
ggtaactcgtcgaagccttctccagatttgcaactactttctcatcacatatgtcattgc
agtgctcttagccagagtcctatatggtggcttatggaaggacctcgtacaattactcat
gatttttcgaagtcttgctgtgaggttagcatccaattggtgattcacaattcagcagca
cataagagttcagtgagagtggttacttctgatgtcatgcgagagaaaaaccaaactgtc
catccacatgattcgaccagtgttcagggtggatggcatgatgtatcgctggaaaatgac
ataaaggcaatctccagtgccaagggtacacgtcatgagaagcaatcttcgaagagcatt
tcaccgtatgtttggtgttcattgagtactgctcaaattgagctccaaccagacagttgt
tctagagttcctctaaaagtatgcatattcgcaccgggtacatacaatttttccaattat
gagctgcaatggaaagtgcttccatcgaaggaagcacaagtggatgaaaatgggtcatct
ggtggtggtccaggacatcctttctatgttactgttcttcaaagtgtctag
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