Panicum virgatum (switchgrass): 120650361
Help
Entry
120650361 CDS
T07260
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 2-like isoform X1
KO
K05610
ubiquitin carboxyl-terminal hydrolase L5 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120650361
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120650361
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120650361
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120650361
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C12: ubiquitin C-terminal hydrolase family
120650361
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UCH
120650361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C12
UCH_C
DUF3086
TetR_C_23
Integrase_DNA
BLYB
Motif
Other DBs
NCBI-GeneID:
120650361
NCBI-ProteinID:
XP_039783413
LinkDB
All DBs
Position
1K:56074038..56082043
Genome browser
AA seq
328 aa
AA seq
DB search
MSWCTIESDPGVFTELIQQMQVKGVQVEELYSLDVDSLSELRPVYGLIFLFKWIPGEKDE
RPVVRDPNPNLFFAQQVINNACATQAILSVLMNRPEIDIGPELSQLKEFTGAFTPDLKGL
AISNSESIRTAHNSFARPEPFISDEQRAATKDDDVYHFISYLPFEGVLYELDGLKEGPVN
LGQCDGSDDLDWLRMVQPVIQERIECYSQSEIRFNLMAIIKNRKEVYSAELEELEKRREQ
ILQEMNNTSATESLNNSLTEVISAIETVSEKIIIEEEKFKKWKTENIRRKHNYIPFLFNL
LKMLAEKQQLKPLVEKAKQQKSSSASTR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgtcctggtgcacgattgagtctgaccctggtgttttcaccgagttgattcagcaaatg
caagtgaaaggtgtgcaggtggaagaactttactctcttgacgtggactctcttagtgaa
ctgcggccagtatacgggctaatttttctcttcaagtggatacctggggaaaaggatgaa
cggcctgttgtcagagatcctaatccaaaccttttctttgctcaacaagtcatcaataat
gcatgtgctactcaagctattctctcagttctcatgaatcgcccagaaattgacataggt
ccagaactatctcaactgaaggaattcacaggagctttcacacctgatctgaagggctta
gctatcagcaacagcgaatctattcggacagctcataacagttttgcaaggccagagcca
ttcatttccgatgagcagagagcagcgactaaggatgatgatgtgtaccatttcataagt
tatttaccttttgaaggtgtcctctatgagctggatgggctgaaggaagggcctgtgaac
cttgggcagtgcgatggttctgatgaccttgattggctacggatggtgcagccagttatt
caagaaaggattgagtgctattcacagagtgagattcggttcaatctcatggcaatcata
aagaataggaaagaggtgtacagtgctgagctggaggaactggagaagaggagggagcaa
attttgcaggagatgaacaatacttccgccacagaatccttgaacaactcgcttacagag
gtgatatcagcaattgagacagtcagcgagaagatcatcatagaagaagagaagttcaag
aagtggaagacggagaacatccggaggaagcacaactatatcccgttcctgttcaacctg
ttgaagatgctcgcagaaaagcagcagctaaaacctctggtcgagaaggccaagcagcaa
aagtcatcaagcgctagcactagatga
DBGET
integrated database retrieval system
