Panicum virgatum (switchgrass): 120655314
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Entry
120655314 CDS
T07260
Name
(RefSeq) nuclear ribonuclease Z-like
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120655314
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
120655314
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
120655314
Prokaryotic type
120655314
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GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Monooxygenase_B
PDEase_II
Motif
Other DBs
NCBI-GeneID:
120655314
NCBI-ProteinID:
XP_039789008
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Position
1N:15625204..15628880
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AA seq
308 aa
AA seq
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MAKVSESAAKSASTAAPPPPPASAPPSRPKAKHRLEVEGYPVEGVSIGGQETCVIFPTLS
LAFDIGRCPQRAVSQEFLFVSHGHLDHIGGLPMYVATRGLFRLRPPTIFVPACLRDLVER
LFEVHRAIDQSELKHNLVPLEVGEEYEFRRDLKVRAFRTYHVIPSQGYVIYSVKQKLKQE
FIGLPGNEIKRLKLSGVEITNTVSTPEIAFTGDTTSDFILDPDNADVLAAKILVVESTFL
DDSIPVEHAREYGHTHLFEIASQSDKLGNKAILLIHFSARYTTEEIDAAINRLPPSFRSR
VYALKEGF
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggtcagcgagtccgcggcgaagtctgcgtccaccgcggcccctcctccccct
cccgcttccgcgccgccttcgaggccgaaggcgaagcaccggctggaggtcgaggggtac
cccgtggagggcgtctccatcggcggccaggagacctgcgtcatcttccccacgctgagc
ctcgccttcgacatcggccggtgcccgcagcgcgccgtctcgcaggagttcctcttcgtc
tcccacgggcacctcgaccacatcgggggcctccccatgtacgtggccacgcgggggctc
ttcaggctgcgcccgcccaccatcttcgtcccggcgtgcctccgggacctcgtggagcgg
ctcttcgaggtgcaccgcgccatagaccagtccgagctcaagcacaacctggtccccctc
gaggtcggggaggagtacgagttcaggagggacctcaaggtcagggctttcaggacctac
cacgtcatacccagccaggggtatgtgatatactcggtgaagcagaagctcaagcaggag
ttcattggcctcccggggaacgagatcaagcggctcaagttatcaggtgtggagatcacg
aatacggtgtcgacccctgaaattgctttcacgggagatacaacatcagatttcattctt
gatccagataatgcagacgtgctggcagcaaaaattcttgttgtggagagtacttttcta
gatgactccattcctgttgagcatgcaagagaatatgggcacacacacttatttgagata
gcaagccagtctgacaagcttggaaacaaagctattctactcattcacttttctgctcgt
tatactacagaggaaattgatgcagcaataaacagattgccaccgtcattccgaagcaga
gtttatgcgttgaaggaaggcttctaa
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