Panicum virgatum (switchgrass): 120656052
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Entry
120656052 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120656052
Organism
pvir
Panicum virgatum (switchgrass)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SET
AWS
zf-CW
Motif
Other DBs
NCBI-GeneID:
120656052
NCBI-ProteinID:
XP_039789976
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All DBs
Position
1N:45196574..45209649
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AA seq
2178 aa
AA seq
DB search
MEESGAGARGPEDHAADAARLLGAEDALSAAAAPEPATAAEVCGAPEARLPAEADQEIGG
HFAVGLVAPVEAVPASIEGRKLQIGQGKGSSLEQKDVDVEVEKGGSLAPASQSSAEPGGL
QTCHEANGRLPHKTLCAPKDTGCVYGMSEETTEGSQFEQEGFVGNGGDWVGEVQGVNATL
EDLRIACDEAECDHAGLLGSTSRGSELQPCAVDGSVSITDANDELQHDALMPDNEAVVSK
PSTNRGSEQEPCAVNGIGVITDANDELQPDALMPDNEAMVSRTAHEDSVPSISGGINLPL
DRKTGQFGGVSGDSMMCHVSDGGMWNNGLCATGGKGSQFIDSRCMYDTVDMATAGSPCQQ
GVLAGGRGVLCGVVVDSQTCYEEPHCGNEGLPDLVNRDILPCSMGAVCLKRNANRDLEKD
VLSNSSWTLHEDSVPSISGHSPAVSLDGNTGRISELPEHRCMVKMACSAELCGTFSCESA
FHKEAPEDERRFSRRKVNTSEEDMPTDCMEAAHDNGDLSDLGKHHSEKLQCGADGLPLMT
GANHELEKAGFLPNINSVASCQVDETSVPSVYGSSIDVPLDGEAGQAVDTSENSAGFGKL
VCDSLGGDMSLCEYGDENQHSGPHADKELQHTPLKYGTSGLSPEGNPCVSSYNQPCDDEP
CCSGKESSALCLGHQDSAVGRSGHLDQGLNASNCADDCSVDFVSNANDGELQSQKLTALN
VFRRRNPKRAASARRDSGRPNQMNQASSSTCKPKKVDVASSLQQSTTSLFPNKISKGRSG
MKRPPKPSTWGSLKELLDGFCQSCRLSTSNPHPTCLDKGRSDNRSDQKSQPSIRRSRSSR
SSKSKFSSMSAAGYAASELNGQSTLSTVVDIGHAASELNKQPACSTVADTDVSLQSHRQN
IPKLSSDTSINIFDSTSNTTESTDSYCTVKSTCIQIDAQQLERALVSSIKETCAANVHGE
CAKLSTSEPSLTNANGSAMLHVEFSPDSVLEVASVTCEGNASASHDVMLHENSTNTGALN
VGGYHPSVSSTSNFGNEQALLSLMNLEQQAEITLHEDTRKEEIDPSHTMVNNDVGEGKAQ
ALQKSNAVRKIRIVRKPGCKNKDGSKGKRKNGISSTKISPSEASKHRPFSSDSISPDPSE
SILCTRPPEFSSCFEALTSGTQDHAIYEHDSIGSHSVMNGGRGSVFDSMKSPRRKKKDAN
AGKKKGKVQDPHKKEKSNKKNIADDTSFDHGILNLPSSDLAASCMNEQSNLGPATEFAPK
NCSAISTDLPGNVACKTDGASVPPPPPPRAAWVCCDDCQKWRCIPAELVDVIGETRWTCK
DNEDKAFANCSIPQEKTNAEINAELDLSDASADEADDDRSNSKACKAPSWTSIRSNWFLR
RQRRTQSIDESMVCNCKPPQDGRLGCGDGCLNRMLNIECVKRTCPCGEQCSNQKFQRRSY
AKLRWFHSGKKGYGLQLQEDVTEGRFLIEYVGEVLDIMSHESRQRYYASKGQKHFYFMAL
NGGEVIDACTKGNLGRFINHSCSPNCRTEKWMVNGEVCIGIFAMRNIKKGEELTFDYNYV
RVSGAAPQKCFCGTAKCRGYIGGDISVDTVTQDDAEAGHFEQMVPDKDPEELMGANGSDS
DGSLQNIAEPEFSIQGEDLHDCSAAKAELEPLEQTGGTVTETCEPQNSLEAWSPQEDEDV
IRTPVHVSRTFESSLQQFPVHGPLSSDLLQKTANSVEGSKAPNVTDGSTPSSDFRSNLVP
GFNTNKRNNLKQHRNVKPQSSTPIDNEHILGVEGRLNNLLDENGGISKRKDATKGYLKLL
VVTAAEGDSAGGTSKSVRDLSLILDALLKTKSRSVLLDIINKNGFQMLHNILKQNRIDFY
RIPIIRKLLKVLEFLAQEGILTSEHINGGPRCAGVESFRDSMLSLVRHKDFQVQQNARRF
RDRWILHNTARSEPTEYPHTSTFAQDIQGTNMVWSSARRKRKSRWDYQPDEHYKMVGLKI
QKFFSGHGKYDVRNKLQRNQGTNNCYNDVHHMESSTEGADDDVPPGFGPKQECQPSQLSI
GSEVAPGLCMEGNQPSLSVSHVVPVGQHFGTPESEGGQCHQKWKVAPGVPFSPFPPFPTY
PRGSPCPSTSSSHMFQPDGTSPANHSSSGNCGRTAGRDGRVHRAWRHGPRPKWPYHHQGR
KFSNNHHRFERIEPPRSQ
NT seq
6537 nt
NT seq
+upstream
nt +downstream
nt
atggaggagtccggcgcgggtgcgcgcgggccggaggatcatgctgctgacgccgcgcgg
ctgctgggagcggaggacgctctgtctgcggcagccgcgcctgaaccagccaccgccgcg
gaggtatgcggcgccccggaggctagattgcccgcggaggcagaccaggagatagggggc
cattttgctgttggattggtggctcctgtcgaggctgttcctgcctcgattgaagggaga
aagcttcagataggccaggggaagggttctagtttggaacagaaggacgtggacgtggag
gtagagaagggaggtagtttggctcccgcgtcgcagagttccgctgaacctggcggtttg
cagacgtgtcatgaggccaatggcaggttgccgcataagacgttatgtgcccccaaggat
accggatgcgtgtatggcatgtcggaggaaacgacagaggggagccagtttgagcaggag
ggtttcgtgggtaacggaggtgactgggttggtgaggtgcagggagtaaatgcaactcta
gaagatttacggattgcttgcgatgaagcagaatgcgatcatgctggcttgttgggttca
acgagtcgtggtagcgagctacagccatgtgccgttgatggctcagtatccatcacggat
gctaatgatgaactacaacatgatgctttgatgccagataatgaagctgtggtctccaag
ccatcaacgaatcgtggtagtgagcaagagccatgtgctgttaatggcataggagtcatc
acggatgctaatgatgagctacaaccggatgctttgatgccagataatgaagccatggtc
tccaggacagcgcatgaagattcagttccttctatttcaggtggcattaatcttccttta
gatagaaagacaggtcagtttggtggagtatctggtgattcaatgatgtgccacgtgtcc
gatggagggatgtggaataacggtttatgtgctactggaggtaaaggatctcagttcatt
gattctagatgcatgtatgacacggtggacatggcaacagcgggaagtccatgtcagcag
ggcgttttggcaggtgggagaggtgttttgtgtggtgttgtggttgattcacaaacatgt
tacgaggaaccacattgtggtaatgagggcttgccagatttggtaaatcgtgacattttg
ccatgcagcatgggtgccgtatgtttgaagagaaatgctaaccgtgatctcgaaaaggat
gttttgtcaaatagctcttggaccttgcacgaagattcagttccttcaatttcagggcat
agtcctgctgtttctttagatggcaatactggtcggattagtgaattacctgaacatagg
tgcatggtaaaaatggcttgcagtgcagaattatgtggtacattttcttgtgagagtgca
tttcacaaggaggctcctgaagatgagcgccggttttccagaaggaaggtaaacacaagt
gaagaggatatgcctacagattgtatggaagcggcccatgacaatggtgacttgtcagat
ctggggaaacatcactctgagaaattgcaatgtggtgctgatggcctgccattgatgact
ggtgctaatcatgagctggaaaaggctggcttcttgccaaatatcaattcagtagcctcc
tgccaagttgatgaaacatcagttccttctgtttatgggagctccattgatgttccttta
gatggggaggctggccaggctgttgatacatctgaaaatagtgcaggctttggaaaattg
gtttgtgattcacttggaggggacatgtcgttgtgtgaatacggtgatgagaatcagcat
tctggccctcatgctgataaagagttgcaacatacccctctgaaatatggaacctctgga
ctatccccagagggaaacccgtgtgtttcttcatataaccaaccctgtgatgatgaacct
tgttgtagtggcaaggaatcatctgctctatgcctgggtcatcaagattctgctgttggt
agatctggccatttggaccaagggctaaatgccagtaattgtgctgatgactgttccgtt
gattttgtcagcaatgctaatgatggagaattacaaagtcaaaagctgacagcattaaac
gtgttcagacgtaggaatccaaaaagagcagcttcagcaagaagagattctgggaggcct
aatcaaatgaaccaagcaagcagcagcacgtgcaaacctaaaaaggttgatgttgcgagc
tcattgcagcaaagcaccacgagtctgttcccaaacaaaatctctaagggaagaagtggc
atgaaaaggccaccaaaaccatctacttggggcagtctaaaagagctattagatggtttc
tgccaaagctgtcggctgtcgacttctaatcctcatccaacttgcttggataaaggaaga
tcagataacagatctgatcagaaaagtcagccaagtattcggagaagtcgaagttcaaga
tcttcaaagagtaaattctcttcaatgtctgctgcagggtatgcagctagtgaattgaat
gggcaatcgaccttatcaactgtggtggatatagggcatgcagctagtgaattgaacaag
caaccagcctgttcaactgtggctgatactgatgtctctttgcaaagtcacagacaaaac
attccaaagttgtcttctgatacatcaatcaatatttttgatagtacaagcaatactaca
gagtctactgacagttattgtacagtgaaatcaacatgtatccagattgatgcgcagcag
ttggaaagggccttggtgagttctattaaagaaacatgtgctgcaaatgtccatggagag
tgtgctaagctttcaacttctgaaccttctttgaccaatgccaatggcagtgccatgctg
catgttgaattttcaccggattctgttttggaggtggcttctgttacatgtgaaggtaat
gcatctgcaagccatgatgttatgttacatgaaaactcaaccaatactggtgcactgaat
gttggtggctatcatccatccgtttcatctacttccaactttggaaatgaacaagcttta
ttatcattgatgaacttggagcagcaagctgaaatcactttgcatgaagacaccagaaag
gaagagatcgatccatctcataccatggttaacaatgatgttggtgaaggaaaagcgcaa
gctttacagaagtctaatgcagtgaggaaaatcagaattgtcagaaagccaggttgcaaa
aataaagatggatctaaagggaaaagaaagaatggtataagttccaccaaaatttctcca
tctgaagcttcaaaacataggccattttctagcgattcaatttctcctgatccatccgag
tcgattctctgcacaaggcctccagagtttagttcttgttttgaagccctaacttctggc
acacaggatcatgctatttatgaacatgatagcattggaagtcactctgtaatgaatggt
ggcagagggagtgtatttgacagtatgaaatcaccaagacgcaagaaaaaagatgctaat
gcaggaaagaagaagggaaaggttcaggatccacataagaaagaaaaaagcaacaagaaa
aatatagcagatgacacttcctttgatcatggtattttaaatttgccttcatctgatctg
gcagcatcctgtatgaatgaacagagtaatcttggtcctgccaccgaatttgcacccaag
aactgtagtgccatatctactgatttacctggaaatgttgcatgcaaaacggatggtgca
tctgtaccaccaccaccaccaccacgtgctgcatgggtgtgttgtgatgattgccaaaag
tggcgctgcatacctgctgaacttgttgatgtcattggagaaacaagatggacttgtaag
gacaatgaagacaaggcatttgctaactgttctattccacaagaaaagacaaatgctgag
atcaatgcagaactcgacctttcggatgcttcggctgatgaagcagatgatgacagatcc
aactccaaagcttgcaaagcaccatcctggacgtctattaggtcaaactggtttctgcgt
cggcaacgcaggacacaatccattgatgagagcatggtgtgcaattgcaagcctcctcaa
gatggtcgactgggttgtggagatggttgcttgaacaggatgctcaacattgaatgtgtc
aagcgtacatgtccatgtggagaacaatgttctaatcagaagtttcagcgacgcagctat
gcaaaactgcgatggttccattctggcaagaaaggttatggactgcagttgcaggaagat
gttactgaaggaaggtttcttattgaatatgttggagaggtccttgacataatgtctcat
gaatcccgccaaagatattatgcttccaaaggccagaaacatttctacttcatggcctta
aatggtggcgaggtaatagatgcttgcactaaggggaacttgggccgattcatcaatcat
agttgcagccctaactgtcgcacagaaaagtggatggtcaatggagaagtctgcattgga
atatttgctatgaggaacatcaagaagggtgaagaattgacatttgattacaactatgtt
cgtgtatctggtgctgctcctcaaaaatgcttttgcggtactgccaaatgtcggggttac
attggtggagacatatcagttgatactgtcacccaagatgatgcagaagcaggacatttt
gaacaaatggttcctgacaaagatcctgaggagttgatgggagcaaatgggtctgattct
gatggcagtcttcaaaatattgcagaacctgaattttctattcaaggggaagatttacat
gattgctcagctgcaaaagcagagttagaaccccttgagcaaactggaggaacagtaact
gaaacttgcgagccccaaaattccttggaagcatggagcccccaggaagacgaagatgtc
atccgcacacctgtgcatgtgtcacgaacatttgaaagttctttgcagcagttcccagta
catggtcctctgtcatcagatcttttgcaaaagactgcaaattcagttgaaggatcaaag
gctccaaatgtgacagatggatcgacacctagttctgatttcaggagcaatctggtacct
ggtttcaatactaataagagaaacaacttaaaacaacatagaaatgtgaaaccacaatca
tcaactccaattgacaatgagcacatcttgggagttgaagggagactgaacaaccttctg
gatgagaacggaggtatcagcaaacgaaaggatgctacaaaaggatacttgaagcttctc
gttgtgactgcagcagaaggtgacagtgctgggggcacatctaaaagtgtgagggatctt
tcattgattctcgatgcacttttaaaaacaaaatcacgttcggtcctgttggatatcatc
aacaagaatggattccaaatgcttcataatatattgaagcagaatagaatcgacttctac
cggatacctattatacggaagcttctcaaggtactggagtttctagctcaggaaggaatt
ttgacatctgagcacataaatggaggtcctcgatgtgctggagtcgaaagcttcagagac
tcgatgctgagcttagtcagacataaggactttcaggttcaacagaatgctcggagattt
cgtgatagatggatccttcataatactgcaaggagtgaaccaacagaatatccacataca
tccacatttgcacaagatatccagggaactaatatggtctggagttctgctaggaggaaa
cgcaagagccgttgggattatcaacctgatgagcactataagatggtgggactaaaaatc
caaaagtttttttctggccatggtaaatatgatgtgagaaacaagttgcagaggaaccag
ggaacaaacaactgttataatgatgtccatcacatggagagttcaacagagggtgcagat
gatgatgtgcctcccgggtttgggcccaaacaggagtgtcagccttcacaactttccata
ggcagcgaggttgctccaggactttgcatggaggggaaccaacctagcttgagtgtttca
catgtggttcctgttggtcagcactttggaacccctgaatctgaaggaggccaatgccac
caaaaatggaaagttgcacctggtgtgccttttagtccttttccaccatttcctacttac
ccacgggggagtccttgtccctccacttcatcatcacatatgtttcagcctgatggaaca
tccccagcaaaccatagtagttctggaaattgtggaaggacagcaggccgagatggaaga
gtgcatagggcgtggcggcatgggccaagaccaaaatggccataccatcatcaaggaagg
aaattttcgaacaaccatcatagatttgaaagaattgagcctccaagatctcaatag
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integrated database retrieval system
