Panicum virgatum (switchgrass): 120657319
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Entry
120657319 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
pvir04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120657319
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120657319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120657319
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120657319
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120657319
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
120657319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
zf-C3HC4_2
WD40_like
zf-C3HC4
zf-C3HC4_3
zf-RING_2
zf-RING_UBOX
eIF2A
zf-C3HC4_4
zf-RING_5
zf-rbx1
U-box
Motif
Other DBs
NCBI-GeneID:
120657319
NCBI-ProteinID:
XP_039791548
LinkDB
All DBs
Position
1N:complement(62920950..62927279)
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AA seq
693 aa
AA seq
DB search
MGDSSVAGALVPSVPKPEAAPSGDASTAAAATTAALALAEEAGTRAASASPQGPAAEGEG
PASRDLLCPICMAVIKDAFLTACGHSFCYMCIVTHLSHKSDCPCCGHYLTKAQLYPNFLL
DKVLKKISARQIAKTVSPIDQFRYALQQGNEMGVKELDSLMTLIAEKKRQMEQQESETNM
QILLVFLHCLRKQKLEELNEIQTDLQYIKEDIGAVERHRLELYRTKERYSMKLRMLLDDS
AAQKLWPSPIDKASSLFLPNSRTPLSASCPGSLQNKKLDLKAQVSHQGFQRRDALTCSEL
PNSTIQSGNVIARKRRVQAQFNELQEYYLQRRRTGAQSLRQEERDIVAMNREGYHAGLQN
FQSVLTTFTRYSRLRVIAELRHGDLFHSVNIVSSIEFDRDDELFATAGVSKRIKVFEFSS
VVNEPSDVHCPVVEMATRSKLSCLSWNKYSKNVIASSDYEGIVTVWDVQTRQSVMEYEEH
EKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTKQEASVINIDMKANICSVKYNPGSSFYVA
VGSADHRIHYFDLRNPSAPVHVFDGHKKTVSYVKFLSNNELASASTDSTLRLWDVKDNCP
VRTFRGHKNEKNFVGLSVNNEYIACGSETNEVFVYHKAISKPAASHRFVSSDLDDADDDP
GSYFISAVCWKSDSPTMLTANSQGTIKVLVLAP
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgggcgactcctcggtggccggcgcgctcgtgccgtccgtgcccaagccggaggccgcg
ccgtccggtgacgcctccacggcggccgcggcgaccacggcggcgctggcgctggcggag
gaggcgggcacgcgcgcggcgtcggcgtccccgcagggcccggcggcggagggggaaggc
cccgccagcagggacctcctctgcccgatctgcatggcggtcatcaaggacgccttcctc
accgcctgcggccacagcttctgctacatgtgcatcgtcacgcacctcagccacaagagc
gactgcccctgctgcgggcactacctcaccaaggcccagctctaccccaatttcctcctc
gacaaggttctgaagaaaatatcggcccggcaaattgctaaaacagtgtcaccaatcgat
caatttcgatatgcattgcaacagggaaatgaaatgggggttaaagagttagatagcctt
atgactttgattgctgagaagaagcggcaaatggaacaacaagagtcagagacaaatatg
caaatattgttagtcttcttgcactgccttagaaagcaaaagctggaagagttgaatgag
attcaaactgatctgcagtacatcaaagaagatataggcgctgttgagagacataggtta
gaattgtatcgcacaaaagaaaggtactccatgaagctgcgcatgcttttggatgattct
gctgcacaaaaattgtggccctctcctatagacaaagctagcagtctctttcttcccaat
tctaggacaccacttagcgcatcatgtccaggaagtttacagaataagaagcttgatttg
aaagctcaagtaagccaccaaggatttcaaaggagagatgctctaacttgttcagagctt
ccaaattccactatacaatcgggtaacgtcattgctaggaagaggcgagttcaagcacag
tttaatgagctacaagaatactacctgcaaagacggcgcactggagcacagtcactcagg
caagaagaaagagacattgttgcaatgaacagagaaggttatcatgcaggtcttcagaat
ttccagtctgtgctaacaacgttcactcgatacagtcgtctacgtgtcattgcggaacta
aggcatggagacttgtttcactctgtcaatattgtatcaagcattgaatttgatcgtgat
gatgaactattcgctactgctggagtctcgaagcgtattaaagtttttgaattttctagt
gttgttaatgagccatcagatgtacattgcccggttgttgaaatggctaccagatctaaa
cttagttgcctcagctggaacaagtactcaaaaaatgttatcgcaagcagtgactatgag
ggtattgtaactgtttgggatgtccagacccgtcagagtgtgatggagtatgaagagcat
gagaagagagcatggagcgttgatttttctcgtacagaaccttcaatgctagtatcaggg
agtgatgattgcaaggtgaaagtgtggtgcacaaaacaagaagcaagcgtgatcaatatt
gatatgaaagcaaatatttgctcagttaaatataatcctggatcaagcttctatgttgca
gtaggatctgctgatcaccgtattcattacttcgatttacgtaatccaagtgcacctgtc
catgtttttgatgggcacaagaagacagtttcgtatgttaaattcttatctaacaatgag
cttgcatctgcatcaacggatagcacgttacggttatgggatgtcaaggataattgcccg
gtaaggacgttcagagggcacaaaaatgaaaagaacttcgttgggttgtctgtgaacaat
gagtatattgcttgtggaagtgaaacaaatgaggtttttgtttatcacaaggcaatctca
aaacctgcagcgagccatagatttgtatcctctgacctggatgatgctgatgatgatcct
ggttcttatttcattagtgctgtctgctggaagagtgatagccctaccatgttaactgct
aacagccagggaacgattaaagttcttgtacttgctccttga
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