Panicum virgatum (switchgrass): 120659943
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Entry
120659943 CDS
T07260
Name
(RefSeq) endo-1,4-beta-xylanase 1-like isoform X1
Organism
pvir
Panicum virgatum (switchgrass)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CBM_4_9
Glyco_hydro_10
bpX6
Motif
Other DBs
NCBI-GeneID:
120659943
NCBI-ProteinID:
XP_039794155
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Position
2N:19284942..19296589
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AA seq
1099 aa
AA seq
DB search
MRRRRGWLSSLFRPRRGGRALPQPDQPRPDSEPEVVDKCGASNEVIMENIVSNGDFSEGL
HLWQPNSCHAFVAVEGSGYHYGVRPHSGSSYAVLTYRTQSWQGLEQDITENVTLGTEYFI
TAYVRVHGEVHEPVGVKATLKFEEESSSTNYVSIARISASQECWEKMEGSFNLTTIPRRL
VFYLEGPPPGVDLLIDSVAISYKKTEKSVSSTIGGTEGIISNYDFSKGLHPWNPICCHAY
VASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQDITNRVSTGTVYVVSAFVRVDGNVQ
DQVEVKGTLRLQNTDGSTHYNPVGSVLASKEKWNKLEGSFSLTNMPKHVVFYLEGPPAGV
DLIIDSVNISCSGHKQSKEVKVTSGVETVIKNPHFEDGLKNWSGRGCNICRHELAAYGNV
RPLNGSYFASATGRVHNWHGIQQEITGRVQRKVLYEINSTVRIFGSANDTEVRVTLWVQE
YGRERYVGLAKNQASDKQWKHLKGRFLLHAPFTKAVIFIEGPPAGIDILVDGLVLSPARK
LQAAPCPKIENVLYGVNLLHNSAFTCGLAGWSPMGSCRLSIQTEAPHMLPSILKDLASQK
HISGRHILASNRTEVWMGPSQVITDKLRLHVTYRVSAWVRTGSGGHGRHNVNVCLAVDNQ
WVNGGQVEADGDQWYEIKGAFKLEKQPSKVTAYVQGPPPGVDLRVMDLQIYPVDRKARFE
YLKEKTDKVRKRDVVLKFQGSNAVNLLGSSVRIQQTENSFPFGSCIAKHNIANEDFAEFF
LKNFNWAVFENELKWYHTEAEQGRLNYKDSDELLEFCEKHKIQVRGHCLFWEVEDAVQPW
VRSLQGHHLMAAVQNRLQSLLSRYKGRFRHHDVNNEMLHGSFYEDRLGRDIRAYMFREAH
KLDPSAVLFVNDYNVEDGCDTKSTPEKFIEQVVDLQERGAPVGGIGVQGHISHPVGEIIC
DSLDKLAILGLPIWITELDVTSENEHLRADDLEVFLREAFAHSAVGGIILWGFWEMFMFR
EHAHLVDADGTINEAGKRYLSLKQEWLTRVNGNVNHQGEFNFRGYHGSYTMEVDTPSGKV
TRSFVVDEHSPVQVITLNI
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgcggaggcgccgcggctggctctcgtccctcttccgccctcgccggggcggccgcgcg
ctcccgcaaccagatcaaccgcgccccgattccgagcccgaggtagtagataagtgtggt
gcttctaacgaagttatcatggagaacattgtgtcgaatggtgatttttctgaaggtcta
catttgtggcaaccaaatagttgtcatgcatttgtagctgttgaaggatcaggttaccat
tatggtgtaaggccacattcagggtcaagctatgctgttcttacttatcgtacacagagt
tggcaggggcttgagcaggacataacggaaaatgtcacccttggtactgagtactttatt
actgcatatgtcagagtccatggggaagttcatgagcctgttggagttaaggccactctc
aaatttgaggaagagagctcttctaccaactatgtttctattgcaaggatttcggcctcg
caagaatgctgggagaagatggaaggttcatttaatctaacaactataccaagacgttta
gtgttctaccttgaaggccctccccctggtgtggacttgctcatagattccgtcgccatc
tcctacaagaaaacagagaagtctgtttcttcaacgattggcggaacagagggcatcatt
tcaaattatgatttttcgaaaggccttcatccttggaatcccatctgctgccatgcatat
gtggcatcacaatggtctggtttcctggatggtattagagggaactcaggagagaactat
gctgttgtttcgaagagaacagagcactggcaaggtcttgaacaagatattacaaataga
gtgtctacaggaactgtttatgtagtttccgccttcgttagagttgatgggaatgtccaa
gatcaagttgaagtcaaaggaacccttcggttgcaaaatacagatggatcaacacactat
aatcctgttggaagtgtgttagcctcaaaagaaaagtggaacaaattggaaggttccttt
tctttgacaaacatgccaaaacatgtcgtattttatctggaaggacctcctgctggcgtg
gatctcatcattgattctgttaatattagttgctctggacataagcagtcaaaagaagta
aaagtaacaagtggggttgagactgtaattaaaaatcctcacttcgaagatgggttgaaa
aattggtcaggaagaggctgcaatatctgcagacatgagctcgctgcatatggcaatgtc
cgccccttaaatggcagttatttcgcttcagcaactggacgggtccacaattggcatggt
atccagcaagaaatcaccggcagggtgcagcgaaaagttctttatgagattaattctact
gttcgaatatttggaagtgccaatgatactgaagtccgtgtcactttgtgggtacaagaa
tatggtcgtgagcgatatgtaggccttgccaagaaccaggcttctgataagcaatggaaa
catttgaaaggaaggttcctccttcatgctccctttaccaaagctgttattttcatagaa
gggcctcctgcaggaattgacattcttgtagatggtcttgtattatcaccagcaaggaag
ctccaggccgcaccatgcccaaaaattgagaatgttctgtatggagttaatctattacac
aatagtgctttcacttgcggacttgctggctggagtccgatgggttcatgtcgattgagt
atccagactgaagcaccccatatgctaccttctatcttgaaggatcttgcaagtcagaaa
catataagcggtcgtcatatccttgcctcaaaccgtacagaagtttggatgggtccttct
caggtaataactgacaagctaaggttgcatgtcacttacagagtatctgcttgggtacga
actgggtctggaggacatggacgtcacaatgtaaatgtttgtcttgccgttgataaccaa
tgggttaatggtgggcaagtggaagctgatggggatcaatggtatgaaatcaaaggagca
ttcaagcttgaaaagcagccatcgaaggttactgcatatgttcagggccctcctccaggt
gttgatctcagagtcatggaccttcaaatatatccggttgacagaaaagcacggtttgag
tatctgaaggagaaaacagataaggtaagaaaacgtgatgttgttctgaagttccaagga
tcaaatgcagtgaatcttttaggttcatctgtgaggatacaacagaccgagaatagcttt
ccatttggatcatgcatagcaaagcacaacattgcgaacgaggattttgctgagtttttc
ttgaagaacttcaattgggctgtatttgagaatgaattgaaatggtatcatacagaagca
gaacaaggacggcttaattataaagattctgatgagttgcttgaattttgtgagaaacat
aaaatacaggttcgtggtcactgcttattttgggaagtggaagacgctgtccaaccttgg
gttcggtcattgcaaggccaccacttgatggctgctgtccaaaatcgtttgcaaagccta
ttgtcaaggtacaaaggtcgctttagacaccacgatgttaacaatgagatgcttcatggt
tctttctatgaagatagattgggtagggacattagagcttatatgttcagagaagcacat
aagctcgatccttctgctgtcttgtttgtcaatgattataacgttgaagatggatgtgac
accaaatctacccccgagaaattcattgaacaagtcgttgatctccaagaacggggtgcc
ccagttggcgggatcggcgtgcaaggccatatcagccatccagtgggagagatcatatgt
gattccctggacaagctggcaatactgggtctccctatctggattactgagttggatgtg
acatcagagaacgaacacctacgagctgatgatctagaagtgttcctccgcgaagcattt
gcgcattctgctgtggggggaatcatcctctggggattctgggagatgtttatgttccgg
gagcacgctcacctggtcgatgcggatgggacaatcaatgaggctggcaaaaggtacctt
tccctgaaacaagagtggctgacccgtgtgaacggcaatgtcaatcaccagggagagttt
aacttcagaggataccatggttcctacacgatggaagtggacacgccttctggaaaggta
actagatcgtttgttgtcgacgagcatagcccggtccaagtgatcactctgaacatttag
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integrated database retrieval system
