Panicum virgatum (switchgrass): 120660280
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Entry
120660280 CDS
T07260
Name
(RefSeq) syn-copalyl diphosphate synthase, chloroplastic-like
KO
K14043
syn-copalyl-diphosphate synthase [EC:
5.5.1.14
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00904
Diterpenoid biosynthesis
pvir01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00904 Diterpenoid biosynthesis
120660280
Enzymes [BR:
pvir01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.14 syn-copalyl-diphosphate synthase
120660280
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Gene cluster
GFIT
Motif
Pfam:
Terpene_synth
Motif
Other DBs
NCBI-GeneID:
120660280
NCBI-ProteinID:
XP_039794644
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Position
2N:complement(35457975..35462998)
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AA seq
756 aa
AA seq
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MLAFTTELLNVPLLRQPTPGVQQPRRRPFLQLHPRRRPCGPALISKSPYSESGKAREQAV
DGHLEQKDEPRETESMVDAIRTALRSIGEGEITISAYDTAMVALLRNPDGGDAPLFPSTF
DWIIQNQLPDGSWGDEAFYMISDRIMSTLACVVALKTWNIHADKCERGQLFIKENIWRLA
HEEEDWMLVGFEIALPSLLDMAKDLDLDIPYNEPALEAIYAERKRKLAKIPRDVLHARPT
TLLHSLEGMVDLDWEKLLKLRCLDGSFHCSPASTATALKETGDQKCFEYLDGMVKKFNGG
VPCIYPLDVYERLWAVDRLTRLGISRHFTSEILDCLDYIYRNWTPEGLAHTKTCPVKDID
DTAMGIRLLRLHGYHVDPCVLKHFEKDGKFFCLHGESNPSSVTPMYNTYRAAQLTFPGDD
DVLRRAKVFCREFLLERRGSNRMKDKWAIAKDIPGEVEYAIDFPWKASLPRIETRMYLDQ
YGGSGDVWIGKVLHRMTLFCNDLYLKTAKADFRNFQRDCRMEWNGLREWYFRSNLEKYGG
TPKSALTAYFLASANIFEPNRAAERLGWARTAVLAEAVSSHLRRIGGPKNSIENLEDLIE
LIPFEGGASASLRDAWKQWLMSWVAKGSQGSIEGDTALLLVRTIEIFSGRHVLTEQKLSL
WEYSKLEQLTSSICSKLSRRVLNLNGKSIENTEDLDRQVDLEIEELSQRALQGSSALNRA
TRETFLHVVKSFCYIAHCPPEQIDNHIDKVIFQDVV
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgctggcgtttactacagagctcctcaatgttcccttgcttcgccagccgacgcccggc
gtacaacagccacggcggcggcctttcctacagctgcaccctcgccgtcgaccatgtggg
cccgcgctaataagcaaatcgccatactcggaatctggaaaagcacgggaacaggcagtt
gatggacatcttgaacaaaaggatgaaccaagggaaacggaaagcatggttgatgccatc
agaacagcattgaggtcaatcggagagggtgagatcaccatttcagcctatgacacggca
atggtagcccttctcaggaacccagatgggggtgatgcgccactgttcccatcgaccttt
gactggatcatccagaatcagctacccgatggttcatggggtgatgaagccttctacatg
atcagcgacaggatcatgagcaccctagcatgtgttgtggcattgaagacttggaacatc
catgccgacaaatgcgagagaggtcagttatttatcaaagaaaatatttggaggttggca
cacgaggaagaggattggatgctagtcggattcgagattgccttgccgtcactcctagac
atggccaaggatcttgacctcgacatcccctacaatgagccagccctggaagcgatatat
gcagaaaggaaaagaaagcttgctaagattccgagggatgtactacacgctaggccaacg
actctgctacacagcttagagggaatggtagacttggactgggagaagctccttaagctc
cggtgtctcgatggatcctttcattgttcacctgcttcaacagctactgctctcaaggaa
acaggagaccagaaatgcttcgagtacctcgatggaatggtcaaaaaatttaatggcgga
gtgccatgcatctaccctttggatgtgtatgaacgcttatgggcggttgatcggttgaca
aggttgggcatatcaaggcacttcacaagcgaaattttggattgcttagactatatttac
aggaactggactcctgagggattagctcatacaaagacctgcccggtaaaggatatcgat
gacacagccatgggtattcgtctcctccgacttcatggctaccatgtcgacccatgtgtg
ttgaaacacttcgagaaggacggcaagttcttctgcttgcacggggagtcgaacccgtct
tctgtcacccccatgtacaacacttatcgggctgcccagctcacatttcctggtgatgac
gacgtccttcggcgggctaaggtattttgccgtgaattcctccttgagaggagaggctct
aacagaatgaaggacaaatgggcaatcgcaaaggacataccaggcgaggtcgaatatgcc
atcgacttcccatggaaagcaagcttgccacgaattgaaacgaggatgtacttggatcaa
tatggaggtagtggtgatgtctggatcgggaaggttctccacaggatgactctcttctgc
aatgatctttatctcaagacagccaaagctgacttcagaaatttccaaagagactgccga
atggagtggaatggccttagagagtggtatttcaggagtaatcttgagaagtatggtggg
accccaaagagtgcactgacagcatacttcttagcttccgcaaatatattcgagccaaac
cgagctgcagaacgtcttggatgggctcgtacagcagtgcttgctgaggccgtctcctcg
cacttgcggagaattgggggaccaaagaattcgatcgagaatcttgaagatcttatcgag
cttattccattcgaaggcggtgcttctgccagtctccgtgatgcgtggaagcagtggctc
atgtcatgggttgcaaaggggagccaaggatcaattgaaggggatacagcactgttgtta
gttcgcacgatcgaaattttctcgggaaggcatgttttgaccgagcaaaagctcagcctc
tgggagtattctaagctcgagcagctcacctcctccatctgctccaaactttcgaggagg
gttctcaatctgaatggaaaaagtatcgagaacactgaggacctagaccggcaagtggat
ttggagattgaagaattgtctcagcgtgctcttcaaggcagcagcgcactcaacagagcg
accagggagacatttctccatgtggtgaagagcttctgctacattgcccattgccctcct
gaacaaattgataaccacatcgataaggtcatattccaggatgtcgtttag
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