Panicum virgatum (switchgrass): 120661004
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Entry
120661004 CDS
T07260
Name
(RefSeq) probable E3 ubiquitin-protein ligase XERICO
KO
K16285
RING/U-box domain-containing protein [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120661004
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120661004
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120661004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-RING_11
zf-C3HC4_2
zf-rbx1
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-ANAPC11
zf-RING_16
Prok-RING_4
FANCL_C
Prok-RING_1
RINGv
zf-C3HC4_4
Vps39_2
zf-Nse
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
120661004
NCBI-ProteinID:
XP_039795618
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All DBs
Position
2N:complement(50532448..50533429)
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AA seq
161 aa
AA seq
DB search
MGISSMPEPRDSLLGFLVYNAVISLAALAGLVRAALVFLDLGDWEADGAGSGDRLVSAAG
PGPAERMQRALLRPARLGPIPGVTTTCGAAAAGDDCSVCLAEFGAAAVVNRLPCGHLFHR
GCLETWLRYERATCPLCRAHVPVPAPAPADDTPGLRYPECE
NT seq
486 nt
NT seq
+upstream
nt +downstream
nt
atggggatctcgagcatgccggagccgcgggacagcctgctggggttcctggtctacaac
gcggtgatctcgctggcggcgctggcggggctggtgcgggcggcgctggtgttcctcgac
ctcggggactgggaggccgacggcgccggcagcggggaccgcctcgtgtccgccgcgggg
ccggggccggcggagaggatgcagagggccctcctccgcccggcgcggctcggcccgatc
ccgggggtcacgacgacgtgcggcgcggcggcggccggggacgactgcagcgtgtgcctg
gcggagttcggggccgcggccgtggtgaaccggctcccctgcgggcacctcttccaccgc
ggctgcctcgagacctggctccggtacgagcgcgccacctgcccgctctgccgcgcccac
gtccccgtccccgcccccgcccccgccgacgacacgccggggcttcgctacccggagtgc
gagtga
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integrated database retrieval system
