Panicum virgatum (switchgrass): 120666617
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Entry
120666617 CDS
T07260
Name
(RefSeq) syntaxin-related protein KNOLLE-like
KO
K08486
syntaxin 1B/2/3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
120666617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120666617
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120666617
Membrane trafficking [BR:
pvir04131
]
SNARE
Syntaxin (Qa)
Stx-PM
120666617
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of epithelial cells
120666617
Exosomal proteins of other body fluids (saliva and urine)
120666617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syntaxin
SNARE
TBCC_N
Motif
Other DBs
NCBI-GeneID:
120666617
NCBI-ProteinID:
XP_039802435
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All DBs
Position
3N:complement(3530367..3531415)
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AA seq
304 aa
AA seq
DB search
MNDLMTDSFVAAAAKAQQGGAPASSAGGDDPELRAFLAEADAAKAEMAALRDELSRLRTA
HEASRNAVAVSSGGGRAATQAALVRLLGSARRLRARLASMDRRAPGPAVQAAAGLRCRVH
DLTGDVQALRRQVSAERREDAARRYLAVAGDAPTEEQLDRLLASADDSDAAMRAALLSAP
AAVAEEQQKAAREVAEVERGLLDLQQVFVDMAALMEAQGVPLDDIERHVAAAAGDVGAAE
AELREARRLQGEARRRRVCLASGLAALLLVAVAIAVVAALLLARRGGGGSGNLLLQIGAD
LPVR
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctcatgaccgactccttcgtcgcagccgcggccaaggcgcagcagggcggc
gcgcctgcctcatccgccggcggcgacgacccggagcttcgcgcgttcctggccgaggcg
gacgcggccaaggcggagatggccgcgctgcgggacgagctatcccggctgcggaccgcg
cacgaggcgtccaggaacgccgtcgccgtcagctccggcggtgggcgcgccgccacgcag
gccgcgctcgtccggctcctcggctccgcgcggcgcctccgggcgcgcctggcctccatg
gaccgccgcgcgcccggccccgccgtccaggccgcggcggggctccgctgccgcgtgcac
gacctcaccggggacgtccaggccctccggcgccaggtctccgccgagcggcgtgaggac
gcggcccggcggtacctcgccgtcgccggggacgcgcccaccgaggagcagctggaccgc
ctccttgccagcgccgacgattccgacgcggcgatgcgggcggcgctgctgtccgcccca
gcggcggtggcggaggagcagcagaaggcggcgagggaggtggcggaggtggagcgcggc
ctcctggacctgcagcaggtgttcgtggacatggcggcgctgatggaggcccagggcgtg
ccgctggacgacatcgagcggcacgtcgcggcggccgcgggcgacgtgggcgcggccgag
gcggagctgcgggaggcccggaggctgcagggcgaggcgcggcggaggcgggtttgcctg
gccagcggcctcgcggcgctgctgctcgtcgccgtagccattgctgtcgtggcggcgctc
ctgctggcgcggaggggcggcggcgggagcgggaaccttctgctgcagatcggcgcggac
ttgcccgtgcggtga
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integrated database retrieval system
