Panicum virgatum (switchgrass): 120667066
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Entry
120667066 CDS
T07260
Name
(RefSeq) S phase cyclin A-associated protein in the endoplasmic reticulum-like
KO
K24869
S phase cyclin A-associated protein in the endoplasmic reticulum
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pvir03037
]
120667066
Cilium and associated proteins [BR:
pvir03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
120667066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SCAPER_N
Motif
Other DBs
NCBI-GeneID:
120667066
NCBI-ProteinID:
XP_039803013
LinkDB
All DBs
Position
3N:69152197..69159382
Genome browser
AA seq
1619 aa
AA seq
DB search
MDNDNGDADDLGSGWFEVKKKHRSSSKYTLQRSSGGSSNKIPNLPSRSRANYNSHSLRWH
DRPQHPPPSVNANVGVDESGSGETTNSHTEGCNDVGADDLKSVLNASASEYVVERPEELL
VAQETSETPKTGLADHANPSVPHESSTCSVNLAKCADLSQHVKCSPKTDPVGALSNTPVK
FGDFDEVPGLSLPSDSYRDNSSSRDLSHGEDAAHFRNEQKDESKLKLETDSCTTTDEASP
IIIQGTETPKDDMRGPQDKHEIPDSMLNVSGSTASTDSVSLSCSNNDHEVPVTSSSVSST
ESRTVLLDHAPASADFGSETAESKERFRQRLWCFLFENLNRAVDELYLLCELECDMEQIN
ESILVLEEAISDFQELKSRAEHFDNTKKSAGVAKEGMPMTVKADHRRPHALSWEVRRMTS
SPHRQEILSSSLEAFQRIQLELACKQAGITAERFTSSSSEEVFGDSSKLTTASATVRNIS
LKVESQVKLPDSSEKKITGEKQIRDAFKSDKSHPQSMPSYSARSRRGSLEPISEIEKHTF
KNSKELPENKFDRLKSTDVVKKSAVHLDKEKQITAPWKSMDAWKEKRNWEDILKSPARSS
RVSHSPGAGRKVTDRARVLHDKLMSPEKKKRSALDMKKEAEEKHARALRIRSQLESERVQ
RLQRTSEKLSRVNEWQAVRSSKLREVMNARHQRGESRHEAYLAQVAKRAGDESTKVNEVR
FITSLNEENKKFLLKQKLYDSEMRRAEKLQVIKTKQKEDTAREEAVLERRKFLEAEKMQR
LAEIQRKKEEAIFRREEERKASSAAREARAAEQQRRKEIRAKAQQEESELLAQKLAEKLR
ESEQRRKYHLEQIRERASMDLRDQPSPFQRRFPSKDGQNRANYTNSGEDSQTTGNSSTAD
SMAKSSNNVQMKRRIKKIRQRLMALKHEFIEPPIGESTGITHRAALGAAKAKLIRWLQDL
QRLRQARKEGAASIGLIVGDITKYLEGKDLELHASRQVGLLDFIASALPASHTSKPGACQ
VTAYLLRLLRVLLSLPANRAYFLVQNLLPPIIPMLSASLENYIKVAASNSGSSNLLSNKT
STENTESSGEVLDGFLWTVTTIVGHVHLDDEQLQMQGGLIELIVAYQIIHRLRDLFALYD
RPQVEGSPLPSSILFGLNLLAVLTSKPGNFSTIDWESCKCRTLGGNIVQEYEYLSSQDSM
GNQLMTLDQSGDTKLPSLCSELTEENKSCKLHDLSIPGDRKFVDETRKDLIAISDGLNNS
AMQPPDLEITTEKRSEIPIQGDENSTTDSFLEARKVNNVGSLYNNSPGKGNETNLKHPVM
LLLSAMAETGLVSLPSLLTAVLLQANNRSSSDQTPAILPSNFEEVATGVLKVLNNMARLD
INLLQCMLARSDLKMEFFHLISFLLSHCMNKWRVPNNQVGLLLLESLLLLGYFSLFHVEN
QAVLRWGKSPTILHKVCDLPFVFFSDPELMPILAAALIAACYGCDQNLSVVQQEISTDML
RSLLKSCQTSALTSPDSFAVDGSGNNSGDNTQSLLDTRNSQGDIPIRSSRKIGRSVVGKG
VSGGIRFNRNRVQKDGRGRGVDDGPLKQRAGEASSNFMLHRKIPASFLDRAEEFFCSEK
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atggataatgataacggagatgcagatgaccttggatcggggtggtttgaagtcaaaaag
aagcatcggtccagctcaaagtacacattgcagaggtcttctggaggttccagcaataaa
attccaaacttgccatcacggtcacgggccaactataacagtcacagtttaaggtggcat
gacaggccgcaacacccacctccaagcgtaaatgctaatgttggtgttgatgaatctggt
agtggagaaacaactaacagtcatactgaaggatgcaatgatgtaggtgccgatgacctg
aagagtgtcttaaatgcttcagcctcagagtatgtagtagaaagacctgaagaactgctg
gtggctcaagaaacaagtgaaactcccaaaactggtctggctgatcatgcaaatccttca
gttcctcatgaatcgtccacctgttcagtcaaccttgcaaaatgtgcagacctttctcag
catgtaaaatgttctccaaaaacagacccagtaggtgccttgtccaatactcctgtaaag
tttggagactttgatgaagttccaggtttatcactaccctcagattcatacagagataat
agttcttccagagacctcagccatggtgaagatgctgcacatttcagaaatgaacaaaag
gatgaaagcaaactcaaactggagacggactcttgtacaacgactgatgaggcatctcca
attattatacaaggaactgagacacccaaagatgacatgagggggccacaggataaacat
gaaataccagacagtatgttgaatgttagtggttcaacagcctcaactgactctgtttcc
ctatcctgctccaataatgatcatgaagttccagttacatcttcatctgtttcttccaca
gaaagtagaacggtacttcttgaccatgcaccagcttctgcagattttggatctgaaaca
gctgagagcaaagaaagattcaggcagaggctatggtgttttctttttgagaatctgaat
agggctgttgatgaactttacctcctctgtgaactagaatgtgacatggaacagattaat
gaatccattcttgttcttgaagaagctatatctgattttcaagaacttaaatccagagcg
gagcattttgataacactaaaaaatctgctggtgtagcgaaggaggggatgccaatgact
gtgaaagctgaccataggaggcctcatgccttgtcttgggaggttagaaggatgacaagt
tcaccacataggcaggaaatactctcttcgtctctagaggcctttcagagaatccaattg
gaactggcatgcaagcaggctggtataacagcagagagatttacatccagctcttctgag
gaagtttttggtgactcgtcaaagctgactacagcatcggcaactgttaggaatataagt
ttgaaagtggagagtcaggtaaaacttcctgatagtagcgagaaaaagattactggagag
aagcaaatcagggatgcattcaagtcagataaatcacatccacaaagtatgccttcatat
tctgcaaggagtagaagagggtcactagaaccaatctcggaaatagagaagcacaccttt
aagaatagcaaggagttgccagaaaacaaatttgacaggctcaagtcaactgatgttgtt
aaaaagagtgcagttcatcttgataaggagaagcaaattacagcaccttggaagtcaatg
gatgcctggaaggagaaaagaaactgggaagatatattgaaatctcctgcaaggagttct
cgtgtttctcattctcctggtgctggcagaaaagttacagatcgtgctcgtgttctacat
gacaagttgatgtctcctgaaaagaaaaaaagaagtgctttggatatgaaaaaagaagca
gaagaaaagcatgcacgagcactgcgtattaggagtcaactagagagtgagagggttcag
aggctacaacgtacctctgaaaagttgagccgtgtcaatgagtggcaggctgtgcgcagc
tcaaaactgcgagaagtaatgaatgcacgccatcaacgtggtgaatctcgtcatgaagct
tatcttgcccaggttgcaaaaagagctggtgatgagagtactaaagtaaatgaggtccgt
tttattacatcgttgaatgaggaaaacaagaaattcttgctgaagcagaaactttatgat
tctgaaatgcggagagctgaaaagctacaggtgatcaaaacaaagcaaaaggaggacact
gcaagggaagaagcagttttggaacgaagaaagttccttgaagctgagaagatgcagcgc
cttgcggaaatacagcgcaagaaagaagaggctattttcagaagagaagaggagcgcaaa
gcatctagtgctgcaagggaagcaagggctgcagaacagcaacgcagaaaagaaataaga
gcaaaagcgcaacaagaggaatctgaacttttagcccaaaaattagctgaaaagctccgt
gagagtgagcagcgccgtaagtatcacctagaacagatacgcgagcgagcttcaatggat
cttagggaccagccttcaccttttcaacgccgctttccaagtaaagatggccaaaaccgt
gcaaattatactaatagtggtgaagattcacagacaactggcaattccagcactgcagat
tctatggctaaatcatctaataatgtacagatgaaacgaaggattaaaaagattcgccag
agattaatggctctaaagcatgaatttattgaaccacccataggtgagagtactggaatc
acacacagggctgctctaggagctgccaaagctaagttaattagatggcttcaagaccta
cagagacttcgtcaagctagaaaagaaggtgctgctagtattggtttgattgtcggcgac
ataacaaagtatttagaaggaaaggatcttgagctacacgcatcaagacaagttggtctg
cttgacttcatcgcatctgccttacctgcatcacacacttcaaagcctggagcttgtcaa
gtcactgcctaccttttgcggctgctgagagtgttgctctcacttcccgctaatcgagca
tattttctagtacagaatcttttacctcctattattccgatgctatcagcatcactggag
aattacattaaggtggcagcatccaactctggaagctcaaatcttctgtctaacaaaact
tcaacagagaatacagagtcgtcaggtgaagtgttagatggtttcttatggactgtgacc
acaattgttggccatgtgcacctcgatgatgaacaacttcaaatgcaaggaggtttgatc
gaactgattgtagcttatcaaataattcatcgtctccgagatttgtttgcgctttatgat
aggccccaggtggaaggatccccactcccatcatcgatactctttggtctcaatcttttg
gctgtcttaacatctaaaccaggaaatttctctaccatcgattgggagtcctgcaaatgc
aggacattaggtggcaatatagttcaagaatatgaatatcttagctcacaagacagtatg
gggaaccagttgatgacactagatcagtctggagataccaaattgccatccttgtgtagt
gaactgaccgaagaaaacaaatcctgtaaactgcatgatttgagcattccaggggacaga
aaatttgttgatgaaactagaaaagacttgatagctatctctgatggcctgaataactca
gcaatgcaaccacctgatttggagattactacagagaagcgttctgaaattcctatccag
ggagatgaaaatagcacaacagacagttttcttgaagcaagaaaggtgaacaatgtaggt
tcactgtataataatagtcctggaaaaggcaatgagacaaacctaaagcatcctgtaatg
cttttactttctgcaatggctgagactggccttgttagtctaccgtcacttttgactgct
gttttgctccaagcaaacaatagatcatcatcagatcagactccagctattcttccatca
aatttcgaagaagtggccactggcgtgttaaaagttttgaataatatggcgcgtttggat
attaaccttctgcagtgcatgctggctagatcagatctaaaaatggaattcttccattta
atcagcttcctgctgagtcattgcatgaacaaatggagggtaccaaataatcaggttggt
ttgctgcttctagagtctctgctacttcttggctacttttctttgttccacgttgagaac
caagctgttcttcggtggggaaagagtcccaccatacttcataaggtgtgcgacctgcca
tttgttttcttcagtgatcccgagctgatgcccatcttggctgctgctctgatcgctgct
tgctatggttgtgatcagaacctaagtgttgtacagcaggaaataagcacggatatgctt
cgttctttgctcaagtcctgtcaaacatcagcattgacttctccagattcctttgctgta
gatggttctggaaacaattccggtgataacactcagagtttactcgatactaggaactca
caaggtgacatcccaataaggtcaagccgcaaaattggacggtcagttgttgggaagggt
gtttcaggaggaatcagattcaacagaaatagggttcagaaggatggtagaggaagaggt
gttgatgatgggcctctgaagcaaagagctggagaagcttcatctaacttcatgttgcat
agaaagatcccagcttctttcttggacagagccgaggagttcttctgcagtgagaaatga
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