Panicum virgatum (switchgrass): 120670406
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Entry
120670406 CDS
T07260
Name
(RefSeq) tetratricopeptide repeat protein 27 homolog isoform X1
KO
K24935
tetratricopeptide repeat protein 27
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pvir04990
]
120670406
Domain-containing proteins not elsewhere classified [BR:
pvir04990
]
Other domain-containing proteins
Tetratricopeptide repeat-containing proteins
120670406
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Gene cluster
GFIT
Motif
Pfam:
TPR_14
TPR_1
TPR_2
TPR_16
TPR_8
TPR_17
TPR_19
TPR_11
TPR_9
TPR_12
SHPRH_helical-1st
DUF4945
TPR_10
FAT
Motif
Other DBs
NCBI-GeneID:
120670406
NCBI-ProteinID:
XP_039806427
LinkDB
All DBs
Position
2K:complement(19757464..19783653)
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AA seq
891 aa
AA seq
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MAAPNGRLGFLREVELRLLRCTLPSPPSTSPPTAPPSPAHPLAAAAASALAAVEEGDYEA
ALAAAASHLLPASASSGPPDSAAQFYADLAAAARAFLLGDGDGGAVGEGFECRCAVVLSA
AVAALLAFTQQNVTGPPKKFSTFPFWTSSLDEGWYSNIGGIWDAWASANLASFGSHVHGK
FSLLQFIVFAELLLTSIQNLDLSDCWSVSWWLFRISMLQQNILDELSSSLSDQVQVYKNK
MLGYFGELEKVSTYWDSLLFDGEGSYFVSAAFLEAGIVEYKYGRLDASRLHLDSAQEACD
LQLSLTGILGFRTIHQVDAKSQMVLVAKTNKSGSDEGQATEPTVALNDNAALKNARSSVP
VESDEFCDILRTPRLVHDGSNSASESKTGPSANIPLSAIQQAAVLAQCLHVSRRSRSDDM
SGWEMAPYIESIDSQGESYFVVRSLCHILRIRWESTRSRTKQRALLMMENLVEDAGKEFP
VAAQRVKMVFGVHMPTLPALRKEYGELLISCGIVGEALEIFKDLELWDNLIYCYRLLGKV
SDAVSLINARLSVNPNDPRLWCSLGDVTNNDDHYKKALEVSNNKSARAMRSLARSAYNRN
DFYTSKILWESALSLNSLVPDGWFAYGTAAWKDKDLDKAVDAFSRAVQIDPENGEAWNNI
ACLHMIRGKSQAAVQAFREAVKFKRNSWEIWENYSKVALDTGNVRLTLEALKTVLNLSSN
KRFNVDILDKVMTMLEEQPPHFVDTPEASDDTNKETIQSNQLLDIIGDILQQIVRSGGSN
ADVWGLYARWHKTKGNLMACSEALLKQVRSLQGSELWHDQKKFTKYAQASLQLCKVYMEI
SSSSGSRRELLTAEMHLKSTLKQAADFSDTEEYKALDNCLEEIKNLIAATA
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccccaatgggcgcctcggcttcctccgtgaggtcgagctccgcctcctccgc
tgcaccctcccctctccgccctctacctcgcccccaacagctcctccttcccctgcgcac
ccgctcgccgccgccgccgcctcagcgctcgccgccgtcgaggaaggcgactacgaggca
gctctcgcggccgccgcatcgcacctcctcccggcctccgcctcctctggaccgcccgac
tccgccgctcagttctacgccgacctggcagccgccgctcgggccttcctactcggggat
ggggacgggggagcggtcggagaggggttcgagtgcaggtgcgcggttgtgctctccgcc
gcggtggctgcgctgctagcattcacgcagcagaacgtgactgggcctccaaagaagttt
tccacttttcctttctggacttcatctttagacgaaggatggtacagtaatattggaggc
atatgggatgcctgggcttctgctaatttagcttcttttggttctcatgttcatgggaaa
ttttcactcttgcagtttattgtgtttgcagagcttttgttaaccagcatacagaatctg
gatctatctgattgctggagtgtgtcatggtggttgtttagaatatcaatgctccagcag
aacattttagatgagttgtcgtcgtcgttgtccgatcaagtgcaagtgtacaagaataag
atgttgggctattttggtgaactggaaaaggtttctacctactgggattctttattgttt
gatggagaaggctcttattttgtttcagctgctttcttagaggctggaatcgtggagtac
aaatatggtcgtcttgatgcttcaaggttgcatctggatagcgcacaagaagcatgtgac
ctacagctctcccttacagggattcttggctttcgaacaatacaccaggtggatgcaaag
tctcaaatggtgcttgttgcgaagaccaataaatcaggatccgatgaaggacaagctaca
gaacccacagtagctctgaacgacaatgcagctttaaaaaacgcaaggagttctgttcct
gttgaaagcgatgaattctgtgacatactaagaacgcccagactggtgcatgatgggagc
aattctgccagtgagagtaagacaggccccagtgcaaatataccactatcggctatccag
caggctgctgtacttgcacaatgcttgcatgtgagccgaaggagtcgaagtgatgacatg
tctgggtgggagatggcaccatacatagagtcaatcgattctcagggcgaatcttacttt
gtggtcaggagcttatgtcatatactgcgtatcagatgggagtcaacccgcagtcgaaca
aagcagagggcactactaatgatggagaatttggttgaagatgctggcaaagaattccct
gtggccgcacaaagagttaaaatggtttttggggttcacatgccaactctccctgccttg
aggaaagaatacggtgaacttttgatcagttgtggtatagttggagaagcactggaaatc
tttaaagatcttgaattgtgggataacttaatatattgctatagattgttaggtaaagtg
tctgatgcagttagtctaataaatgctcgactctctgtcaatccaaatgacccaaggcta
tggtgttcacttggtgatgttacaaataatgatgatcattataaaaaggcattagaagtg
tcaaataataaatctgcccgagctatgcgttcactggctcgcagtgcgtacaacaggaat
gacttctatacgtccaaaatcctatgggaatctgcattgtcgttaaactctttggttcca
gatggctggtttgcatatggtacagctgcatggaaggataaggatcttgacaaagctgtg
gatgcatttagtcgtgctgttcagatagatcctgagaatggagaagcatggaacaacata
gcctgcctgcacatgattagaggaaaaagccaagcagcagtacaagcattcagggaagct
gtaaagttcaagaggaatagctgggaaatttgggaaaattacagtaaagttgctttggac
acaggaaatgttcgactgacacttgaagctttaaaaactgtattaaatttatcctcaaac
aagcgcttcaacgttgatatattggacaaggtgatgacaatgcttgaagaacaacctcca
cactttgttgatactcctgaagcatcagatgacacaaataaagagactatacaatctaat
caattgttagatattattggtgatatccttcagcagattgtgcgaagtgggggcagcaat
gcggacgtatggggtttgtatgccagatggcataagaccaagggtaacctcatggcatgt
tcggaagctttgttgaagcaagttcgatctcttcagggttcagaactatggcatgaccaa
aaaaagttcacaaaatatgctcaagcttctctgcagctttgcaaggtgtacatggaaatt
tcatcctcatctggaagccgacgggaattattaacagccgagatgcaccttaaaagcacc
ttgaaacaggcagcagatttctcggataccgaggagtataaagctcttgataactgtctt
gaggaaataaagaacctgattgctgccactgcctag
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