Panicum virgatum (switchgrass): 120670468
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Entry
120670468 CDS
T07260
Name
(RefSeq) protein SHORT ROOT IN SALT MEDIUM 1-like
KO
K25827
cell division cycle and apoptosis regulator protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120670468
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
Others
120670468
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DBC1
LAIKA
BURAN
EF-hand_7
EF-hand_6
Motif
Other DBs
NCBI-GeneID:
120670468
NCBI-ProteinID:
XP_039806498
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Position
4N:complement(33183539..33195500)
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AA seq
1367 aa
AA seq
DB search
MFPSKGPSHYGQQPPYGGQQPYGQIPGSTGFTASAAAGGADGGRFGARAGQVGAAQYGGP
YASVYGTQQVGGLGGKGPASSTLPSLPTRPTSLSESSKFSSAPVGSSLARPNDDYMAVRG
YAQKLEQYGSDYPLERRIYGEHSTNLGRRDGLSDLDRRYPDHMPAGHQVHDHMEQGSSMH
HQQLLKGQLQPGSDTRQADYFAGRSAPIHQASQEIGAYGRVEAESRNMSILGTAPYVRQQ
AASLLEGAPRTNIDSLYGQGSSSTGYGAGLPPGRDYSSGKGLLHPSSDPDYRDSILPRVH
PGISMVDERRVDRIGYRREQDIRDEERRRDLMLEREKELEWERERELRDLRDRERERERE
RERDRERLLRERERERELERERERERERERDRERECLRERREKERERDRKHGADPRRELT
SPRVPGDRRRSSSVRSEKPVRRVSPRREAVHRHRPPVKEIKRDYICKVFPFRFVDDERDY
LSLTKRYPRLAITPEFSKIVLNWAKENLNLSLHTPVSLEHDMHDADDCADEGAMISSEKT
SSSDTQVTIWNAKVLLMSGMSKGAFAEITSLRNTEERVLHLNNILKFAVFKKDRSLFAIG
GPWNAAIDGGDPSVDCSCLIRTAIRCVKELVQVDLSNCTHWNRFVEVHYNRIGKDGLFSH
KEITVLFVPNLSDCLPSVDVWKNNWIAYRKSKAEREQLTMKKEKSPGESKEQTQGELSKG
KSIDGGLKEGDVGSSDMKDDKVDSDMDQKGMDVEGKVAKVEEPTEKMGGDVEAKTTEGPS
ADHAAGDKKPIKKKVIKKVMKVVRKKTTAGASADKSSTEDKNIAAESASKTAGGGQSQLN
SEDAGKEPVGAGSNQQPEAKKTGKKKIIRRVVKRKVSASGSQLTAPATPVETSKKEAVQP
EKNLESSTEAGNSQTKLQEGSKTSAEDVSSQKDQKEEEKPEEKVHTLTDEKSPNGDKANH
KEVVEQKDMKKDGKKEKTKDDKEKKNRDIKVEPKLKPLNDLKEKKKSDEPPKYPGFILQA
KRSKESKLRSTSLSLDGLLDYTAKDIEESVFELSLFAESFSEMLQHRMGCVILSFLEKLS
KRYVLKRNQRKRQREEDLKKEEKKSLEKRPKTAHEAITESADSPEGDVKMTKEGEEKMST
DRSASVHDEQSKEGQVKLGTDHPISNHDEPAKESGEKMNSHSEAALKEAEAGTKMDEEDP
EYEEDPEEIEIYEDDEDMNDAHSEEPTAEQNEDDREAKPEVAAEDGTKEPELENVANIHG
KAASVEEKQSIAEKVDSVEGGEKVVSKEVKPAKDEVVDKELLQAFRYFDQNRAGYLKVDD
LRCILHNLGKFLSSKDVKDLVQIALIESNSARDNRILYPKLVKIVDL
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgttcccttcgaaagggcccagtcactacggccagcagccgccgtatggtgggcagcag
ccgtacggccaaatccctggtagcactggatttacagcctcagcagcggcgggcggcgcc
gatggtggtcggtttggtgcccgagctggacaggtaggcgctgcgcagtacggcgggcct
tacgcatcagtttatggcacacaacaggttggtggacttggtggaaaaggtccagcatct
tcaactcttcctagcttgccaactcgtccaacttcgctctctgagtcatctaagttctcg
tctgcacctgtggggtctagcctggcaagaccaaatgatgactatatggctgtgcgtgga
tatgcacagaagctagaacagtatggcagtgattatccactagagagaaggatttatggt
gaacactcaactaatcttggtaggagagatggtctcagtgatttggatagaaggtatcct
gatcatatgcctgctggtcaccaggttcatgaccatatggagcagggttcatctatgcac
caccagcagctcctgaaaggccagctgcagcctggatctgatacaagacaagccgattac
tttgcaggaaggtccgctccaatccatcaagcatcccaggaaattggtgcatatggaaga
gtcgaagctgagagccgcaacatgtccattcttgggactgctccatacgtaagacagcag
gcagcttcattgttggaaggagctccacggacaaacattgacagcctctatggacaagga
tcatcaagtactggatatggtgcaggtctgcctcctggacgtgattattcctcggggaaa
ggcctgctccacccatcttcggatcctgattaccgagatagcatcttaccccgcgtacat
ccgggcatctcaatggttgatgaacgtagagttgatcggattggttatcgccgcgaacag
gatataagagatgaagagcgcagaagggacctaatgctggaaagagagaaggagcttgaa
tgggagcgggaacgcgagttacgagacttgcgagatcgtgaaagagaaagagagcgtgaa
agggaaagggaccgtgaaagactactaagagaacgcgaaagagaaagagaactggaacga
gaacgcgaacgtgaaagagaaagggaacgcgatcgtgaaagagaatgcctacgtgagcgg
cgggagaaggagagagaacgggatagaaagcacggagctgatccaaggcgggagctcact
tcacctagagtacctggtgatcgacgacgttcttcttctgttagatctgagaagcctgtt
cggcgagtttcccctcgacgtgaagctgtgcataggcatcgtccacctgttaaagaaata
aagagagattatatttgcaaggtttttccatttcgtttcgtggatgatgagagggattat
ctgtccttgacaaaacgatatcccagacttgcaatcactccagaattttctaagattgtc
ttgaactgggctaaagaaaacttgaatctttctctgcatacaccagtaagtctggagcat
gatatgcatgatgctgatgattgtgctgatgaaggagcaatgatctcttctgagaaaacg
tcaagctccgatactcaagtcaccatatggaatgcaaaggtactattgatgagtggcatg
agcaaaggtgcctttgctgaaataacttcattgagaaatactgaggaacgagttttgcac
ttgaacaatatcttaaaatttgctgtgttcaagaaggatcgttctctttttgcaattggg
ggcccttggaatgcagcaatagatggtggtgatccgtcagttgactgttcttgcttgatt
cgaactgccatcagatgcgttaaggagctggttcaagttgatctttctaattgtacccat
tggaatcgttttgttgaggtccattacaatagaatcggcaaagatggactctttagccat
aaagaaattactgtactgtttgtgcctaatctgtcggattgcctgccttcagttgatgta
tggaagaataactggattgcatatagaaaatcaaaggcagaaagggagcagctcactatg
aaaaaggaaaagagccctggtgaatcaaaagagcagacgcaaggggaattgagcaagggt
aaaagtatagatggtggcctaaaagagggcgatgttgggtccagtgatatgaaagatgat
aaagttgattctgatatggatcagaaaggtatggatgtggaaggtaaggttgctaaagtt
gaggaacccactgagaagatgggtggagatgttgaagcaaaaactacagagggcccctct
gctgaccatgcggctggggataaaaagcccataaaaaagaaagtaataaaaaaagttatg
aaagttgttcggaaaaaaacaaccgctggagcttcagctgataaatcttctactgaggac
aagaatattgcagcagaatctgcaagcaaaactgcaggaggtgggcagagtcaactgaac
agtgaggatgctggaaaagaaccggtgggagctggcagcaatcagcagcctgaagcaaag
aaaaccggcaagaagaaaattattcgaagggttgttaaaagaaaagtttctgcttcaggg
tctcagttgactgctcctgctacccctgtcgaaacgagtaagaaagaagcagttcagcca
gagaaaaatcttgagagttcaaccgaagctggaaattctcagaccaagctgcaagaaggg
tccaaaacttctgctgaagatgtctcaagtcagaaggaccagaaggaagaagagaaacca
gaggaaaaggtgcacacactgactgatgaaaaaagtccaaatggtgataaggctaaccac
aaggaagttgtagaacaaaaagatatgaaaaaggatggaaagaaagagaagacaaaggat
gataaagagaagaagaatagagacatcaaggtggagccaaagctaaagccactaaatgac
ttgaaagaaaagaagaagtctgatgaacctccgaaatatccaggattcatccttcaagca
aaaaggagtaaagaatctaaactccgttcgacatccctttcgttggatggcctcctagat
tatactgccaaggatatagaggagtcagtgtttgagctttctttgtttgctgagtcattc
agtgaaatgcttcaacacagaatgggttgtgttatactgtcttttcttgagaaactgtcc
aagcgttatgttttaaagaggaatcaacgtaaacgccagagggaggaagatctaaagaaa
gaagagaagaaatccttagagaagcgacccaagacagctcatgaggccataactgaaagt
gctgatagtccagagggggatgttaaaatgacaaaagagggtgaagaaaagatgagcaca
gatcgttcagcaagtgtccatgatgagcagtcaaaagagggtcaggtaaaattaggcact
gatcatccgatctctaaccatgatgaaccagcaaaagagagtggggaaaagatgaactca
cattcagaagctgcccttaaagaagctgaagctggtacaaagatggatgaggaagatcct
gagtacgaggaagatcctgaagaaatagaaatatatgaagatgatgaggacatgaatgat
gctcattctgaagagccgactgcagaacagaatgaggatgacagagaggctaagccagaa
gtagctgcagaagatggtacgaaggagcctgaattggaaaatgttgctaatatccatggc
aaagctgcttcagtggaggaaaaacagtctatagccgagaaagtagactcagtggaaggt
ggagagaaggtagttagtaaggaggtgaagccagcaaaagatgaggtggttgataaggaa
ctattgcaggcctttaggtacttcgaccaaaacagagcaggatatctcaaggtggatgat
ttaagatgtattcttcacaacttggggaagtttttatcaagcaaggatgtgaaggactta
gttcaaattgctcttattgagagcaattctgcaagggacaatcgcatactctatccaaag
cttgtgaagatagttgacctatga
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