Panicum virgatum (switchgrass): 120675294
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Entry
120675294 CDS
T07260
Name
(RefSeq) ABC transporter B family member 4-like isoform X1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120675294
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120675294
04147 Exosome [BR:
pvir04147
]
120675294
04090 CD molecules [BR:
pvir04090
]
120675294
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120675294
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120675294
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120675294
CD molecules [BR:
pvir04090
]
Proteins
120675294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
AAA_29
AAA_16
Zeta_toxin
RsgA_GTPase
DUF87
AAA_21
AAA_30
AAA_15
APS_kinase
DUF815
AAA_23
ATPase
Motif
Other DBs
NCBI-GeneID:
120675294
NCBI-ProteinID:
XP_039812365
LinkDB
All DBs
Position
5N:52606929..52615486
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AA seq
1271 aa
AA seq
DB search
MAGRARDTTATGEGGEMTTEGRRSGGGSASAGAAAKVAPFLGMLRYADRADAGLMAVGAA
ANGMSEPLMSVVFAAVIECFGAGDDATVLHRVSKVVMYYIYLGIGTAVASFLQVSCWTVA
GERQSTRLRSLYLEAVLRQDIAFFDVEMTTAEAASRMSADTVLIQDALGEKVGKYIQLVT
TFVGGFIIGFVRGWMLALVVLACIPPSILSFATVSRLRAQISSKRQESYGDAGNIVEQTI
GAIRTVVSFNGEKKAIAMYNNHIKRAYKATLMEGIITGLGVGCVFFVVFCSYSLAFWYGA
RLIISKGYTGGQVINIVFAILTGSVAIGNASPSISAIAEGQSAAQRLFEVINRKPNIDTK
TSGIVLEDIKGDVELKDVFFRYPARPEQLILDGLCLQVPSGTTVAIVGESGSGKSTVISL
VERFYDPQTGEVLVDGVNIKSLQLHWLRGKISLVSQEPLLFMTSIKDNITYGKEDATLEE
IKRAADLANAANFIEKLPNAYETMVGQRGAQLSGGQKQRIAIARAILKNPKILLLDEATS
ALDVESERVVQEALNRIMVGRTTLIVAHRLSTISSADCIAVVHQGKVVEQGVHDELIKDP
DGAYSQLIRLQKAHTKDMHEAPNIEVSGSIYKSRSLSMEQSIARYSPRNKGQHSFTKSMG
LSGSDELSRQVITDEQEDKESGDSKAPKKAPIQRLFKLNKPEAPVLILAVIAAFVHGLMF
PSFSIMMSGGIRTFYYPPHQLRKDSRFWALVCLLFAVIALISIQLEFFLFGMAGGKLIQR
VRSLTFQSIVHQEVSWFDEPSNSSGALGARLYIDALNIRRLVGDNLAILVQCIVTLIAGF
SIAFASDWKLTLIVICVIPVVGSQNYIQVKFLKGFSEDAKVMYEDASQVVTEAIGNIRTV
ASFCAEKRVITSYTQKCKASMKQGIRSGTVGGLGFSFSNLMMYLAYALCFYVGALLVHEG
KSTFKDVFRVYFALIFTAFGVSQTSGMATDSTKAQESTVSILAIIDRKPKINSTSDEGIM
LEKVDGNIDFRHVNFKYPSRPDVQVLNDFTLGIPARKTIALVGESGSGKSTIIALLERFY
DPDSGTILLDGAELKKLKLSWLRDQMGLVSQEPVLFNDTIHANIAYGKQGEVKEDEIISA
AKAANAHEFISSLPQGYSTTVGERGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDA
EAERIVQDALDQVKVSRTTIVVAHRLSTIKGADIIAVIKDGKVAEKGKHESLVGIKGGVY
ASLVELHSKSA
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggctgggagagcgcgggacacaacagcaacaggcgagggcggcgagatgacgacggag
gggcgacgatccggcggcggcagcgctagcgcgggtgcggcggccaaggtggcgccgttc
ctgggcatgctccggtacgccgaccgcgcggacgcggggctgatggcggtcggcgcggcg
gccaacggcatgtcggagccgctcatgtcggtcgtgttcgcggccgtcatcgagtgcttc
ggcgccggcgacgacgccacggtgctccaccgggtcagcaaggttgtcatgtactacatc
tatctgggaatcggaacagcagttgcttcctttctccaggtgtcatgttggacagtggct
ggagaaaggcagtcaacacggctgcgatcgttataccttgaagctgttctcaggcaagac
attgcattctttgacgtagagatgacaactgcggaagcagcttcaagaatgtctgcagac
actgtactcatccaagatgccctcggagagaaggtagggaagtacatacagcttgtgaca
accttcgttggtggctttatcattggattcgtaagaggctggatgctggctcttgttgtg
cttgcgtgcatacctccaagcattctatcctttgcaactgtctcccgactgcgagctcaa
atatctagcaagaggcaagaatcatatggagatgcagggaatattgttgagcaaaccatt
ggagcaataagaacagtcgtatctttcaatggcgagaagaaagcaattgcaatgtacaat
aatcacataaaaagggcgtacaaggctactctcatggaagggattatcactggtcttgga
gtaggctgcgtattttttgttgtcttctgcagttactctctagccttctggtatggtgcc
aggttaatcatcagcaaaggatatactggagggcaggtcatcaacatcgtatttgcaatt
ttaactggttcagtggctataggtaatgcatcaccatctatttctgcaattgcggaaggt
cagtctgcagcacagaggctgttcgaagttatcaacagaaaaccaaatattgataccaaa
acatctggaattgtattagaagatatcaagggagatgttgaactcaaggatgtattcttt
aggtaccctgcaaggcctgagcagttgatacttgatggcttgtgcctacaagtacctagt
ggtaccacagtggctatagttggggagagtggaagtggtaagtcaacggtaattagtcta
gtagagagattttacgacccacagactggtgaagtgttagtagatggagtcaacatcaag
agtttgcaactccactggttaagaggaaagatcagccttgtcagccaagaaccattgctt
tttatgacctccatcaaggataacataacctatggtaaagaggatgctacacttgaagag
atcaaaagagcagctgaccttgcaaatgcagcaaatttcattgaaaagttgcctaatgca
tatgagacaatggttggtcaacgtggtgctcagctttctggggggcagaagcaaaggatt
gccattgcaagagcaatccttaaaaacccaaaaatccttcttttagatgaagctacaagt
gctttggatgtagagtccgaaagggtagttcaagaagcactgaatcggatcatggtaggg
agaactacactcattgtagctcaccgcctgagcaccatcagcagtgcagactgcatagca
gtagttcatcaagggaaagtagttgaacaaggtgtccatgatgagttgattaaggatcct
gatggagcttattctcaactcatcaggctacagaaggcacatactaaagatatgcatgag
gctccaaatattgaagtttcaggttcaatatataaaagtagaagtttatctatggaacaa
tcaatagccagatattctcccaggaacaaaggacagcattccttcacaaaatccatgggc
ttgtctggatctgatgaattgagcaggcaagttattacagacgaacaggaagacaaagaa
tctggtgatagtaaggctccgaagaaagcaccaatccaacgactatttaaacttaataag
ccagaagcgccagttctcatattagctgttatagctgccttcgtgcatggtcttatgttc
ccatcattcagtataatgatgtctggtggtataagaactttctactatccaccacaccaa
cttcgaaaagattctaggttttgggcattggtgtgccttctcttcgctgtcatagccctg
atttcaatccaactggaattctttctgtttgggatggctggagggaaacttatacaacgt
gtccgctctttgactttccaaagcatagtgcatcaagaagtttcatggtttgatgaacct
tcaaattccagtggggcacttggtgcgaggctctatattgatgctttgaacatccgacgc
ctcgttggagataacttggccatactagtgcagtgcatagtaacactaatagctggcttt
tccatagcatttgcttctgactggaagctcacactgatcgtcatatgtgtgattcctgta
gtgggctcacaaaattatattcaagtcaaatttttgaaagggttcagtgaagatgctaag
gtgatgtatgaagatgcaagtcaagtagtgactgaggcaattggtaatatacggactgta
gcatctttctgtgcagagaaaagagtaattacatcatacacccaaaaatgcaaagcttca
atgaaacaaggcattcgaagcggaacggttggaggccttggtttcagtttctcaaactta
atgatgtatcttgcatatgctctttgtttctatgttggtgcactgttagtacatgaaggc
aaatcaacttttaaagatgtttttagagtttactttgctttgattttcacagcttttgga
gtttcccaaacaagtggaatggcaacagattcaacaaaagcccaggaatccaccgtgtcc
atactagctatcatagacaggaagcctaaaatcaactcgactagtgatgaaggcattatg
ctagaaaaagttgatggcaatatagatttcagacatgtaaacttcaagtacccttctcgc
ccagatgtccaagtgctcaacgactttactttgggcattccagcaagaaagactattgca
cttgttggagagagtggtagtggtaagtccacaataattgctttgctagagcgattttat
gacccagattctggcacaatattactagatggagcagaacttaagaaactaaaactgagt
tggttaagagaccaaatgggattagtgagccaagaacctgtacttttcaatgacacaatt
catgccaacatagcatatggaaaacaaggagaagtaaaggaggatgagattatttctgct
gccaaggcagccaatgctcatgagttcatatctagcttgcctcaaggatatagcactact
gttggtgagagaggaacacaactctctggtgggcaaaagcaacgggtagcaattgcaagg
gccattttgaaggacccaagaatacttctactggacgaggcaacaagtgccctggatgct
gaagcggagcgtattgttcaagatgcgttggatcaagtgaaggtcagcaggaccaccatt
gtcgtggcacaccgactgtccacaatcaaaggggcagatataattgcagtcatcaaagat
ggtaaggttgctgaaaaggggaagcatgaatccctagttggcatcaagggtggtgtttat
gcatcgctggtggaactacactccaaatcagcataa
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