Panicum virgatum (switchgrass): 120675571
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Entry
120675571 CDS
T07260
Name
(RefSeq) ABC transporter B family member 20-like
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120675571
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120675571
04147 Exosome [BR:
pvir04147
]
120675571
04090 CD molecules [BR:
pvir04090
]
120675571
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120675571
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120675571
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120675571
CD molecules [BR:
pvir04090
]
Proteins
120675571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_29
AAA_15
AAA_21
AAA_16
DUF87
nSTAND1
AAA_30
ABC_ATPase
Motif
Other DBs
NCBI-GeneID:
120675571
NCBI-ProteinID:
XP_039812703
LinkDB
All DBs
Position
5N:complement(72084634..72093931)
Genome browser
AA seq
1399 aa
AA seq
DB search
MVSRGLFGWSPPHVQPLTPVSETSEPPESPSPYAADLGRGGDGAPPPDDDAQPPLDDADD
DPDPPPAAVPFKRLFACADRHDWALMAAGSLAAAAHGVALVVYLHLFGRAINSLHGRHTH
DLFHNINQHALYFLYIAIGVFFAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDT
YGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFGGLVIGLVNCWQIALLTLATGPF
IVAAGGISNIFLHRLAENIQDAYGEAASIAEQAILYIRTLYSFTNETLAKYSYATSLQAT
LRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLISHGRANGGEVVVALFAIILSGLG
LNQAATNFYSFEQGRIAAYRLYEMISRSTSTVNQDGHTLSSVQGNIEFRNVYFSYLSRPE
IPILSGFYLTVPARKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL
RSQIGLVTQEPALLSLSIRENIAYGRSATTDQIEEAAKTAHVHAFISSLEKGYETQVGRA
GLSLTEEQKIKLSIARAVLSNPSILLLDEVTGALDFEAEKAVQEALDILMLGRSTIIIAR
RLSLIRNADYIAVMEEGQLVEMGTHEELLNLDGLYAELLRCEEAAKLPKRTPIRNYKELS
SFQIERDSSASHSFQESSSPNMSKSPSLQKTHGFLTFRNSDANHNSHESPNIQSPPAEQM
AEARLPMVASERAPSIKRQDSFEMKLPDLPKIDVPLHRQSSNTSDPESPISPLLTSDPKN
ERSHSKTFSRPPDIFDSFHAEDSRKPQTKAPSFWRLAELSLAEYFYALLGSAGAACFGSF
NPLLAYTISLIVVAYYKIGVHDVHDEVNKYCSFIVGMGIITVLANFLQHFYFGIMGEKMT
ERVRRMMFSAILRNEVGWFDDEDNSADILSMRLANDATFVRAAFSNRLSIFIQDTSAIFV
ALLLGMLLQWRVALVALATLPILIISAVAQKMWLSGFSRGIQEMHRKASLVLEDAVRNIY
TVVAFCAGNKIMELYRLQLGDILTKSFIHGMGIGVAFGFSQFLLFACNALLLWYTAAAVK
DGHLSLVTALKEYIVFSFATFALVEPFGLAPYILKRRKSLTSVFEIIDRVPKIDPDDASG
LKPPNVYGSIEFRNVDFCNPTRPEMMVLSNFSLRVNGGQTVAVVGVSGSGKSTIVSLIER
FYDPNAGQVLLDGRDLKLFNLRWLRSHMGLVPQDPVTFSTTIRENIIYARHNATESEMKE
AARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSAIE
SESSRVVQEALDTLIMGNKTTVLIAHRAAMMKHVDNIVVLNGGRIVEQGYHDSLVQLNAL
YVKLMQPHFSKGFRQRRLI
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcgcgggggctcttcggctggtccccgccccacgtccagccgctcacgcccgtc
tccgagacctccgagccgcccgagtcgccctctccctacgcagccgacctcggccgcgga
ggggacggcgccccgccgcccgacgacgacgcccaaccgcccctcgacgatgccgacgac
gaccccgacccgccgcccgccgccgtccccttcaagcgcctcttcgcctgcgccgaccgc
cacgactgggcgctcatggccgccggcagcctcgcagccgctgcccacggggtcgcgctc
gtcgtctacctccacctcttcgggagggccatcaactcgctccatggccgacacacgcac
gacctcttccacaacatcaaccagcacgccttatacttcctctatatagccattggcgtt
ttctttgctggatggatagaggtttcgtgctggattttgactggggaaagacagacggca
gtgattagatccaagtatgttcaagtcctgttgaaccaagacatgagtttctttgatacc
tacggcaacaacggtgatattgtcagtcaagtactgagcgatgtcttgctcattcagtct
gctctaagtgagaaggttggaaactatattcacaacatggctacattttttggcggtctt
gtcattggtttggtcaactgctggcaaatagctttattgacattagcaaccgggcccttc
attgttgctgcgggaggaatttcaaacatatttctccacaggcttgcagaaaatattcag
gatgcttatggtgaggcagcaagcattgctgaacaggcaatcttgtacattaggactttg
tactccttcacaaatgagacccttgcaaaatattcttatgctacttcacttcaagcaaca
ttgcgctatggaatactcataagtttggtgcaaggtcttggtcttggctttacatatggg
cttgccatatgttcttgtgccttacaactttgggttgggaggttccttatctcacatgga
agagctaatggcggtgaagttgtagtagctctgtttgctatcatcttgagtggacttgga
cttaatcaagcagcaacaaacttctattcctttgagcaaggacgcattgctgcgtacaga
ctatacgaaatgatcagccgttcaacatctactgtaaaccaggatggccacaccttatct
tcagtgcaaggcaacatcgagttccgcaatgtctacttcagttatctgtcccgaccagaa
atccccatcttaagtggattctaccttacagtacctgctagaaagactgttgctctagta
ggaagaaatggttcaggaaaaagcagcataattcctctaatggaacgtttctatgaccca
accttaggtgaagtgcttttggatggggagaatatcaagaatttgaagctagagtggtta
agaagccaaataggacttgtgactcaggaaccagctttgttgagcttgagcattagggaa
aatatagcatatggcagatctgccacaactgaccaaattgaagaggcggcgaaaacagct
catgtgcatgctttcatcagttcactagaaaaaggatatgaaacacaggttggtcgggct
ggcctttctctgacagaagaacaaaagataaagctttccattgctcgtgctgtgctctca
aatccatcaattcttctactggatgaggtcactggtgctcttgatttcgaggctgagaaa
gctgttcaggaagcactagacattttaatgcttgggaggtctaccatcatcatagctcgg
cgcctgagtcttatcaggaatgctgattatatagcagtaatggaggaaggtcaacttgtt
gagatggggacacatgaagaattgttaaacctcgatggcctttatgctgaacttcttagg
tgtgaagaagcagctaaacttccaaagaggacaccaatcagaaactacaaagagctgagt
tccttccaaattgaaagggattcatcagcaagccacagctttcaagagtcgtcttctcca
aacatgtcaaaatcaccgtcacttcagaaaacacatggttttctcacgttccgaaattca
gatgccaatcataactcacatgaatcaccaaatattcaaagcccccctgcagagcaaatg
gcagaagccagacttccaatggttgcttctgagagagctccatccatcaaaaggcaggac
agttttgaaatgaaattgcctgatcttcccaaaattgatgtcccgctgcaccggcagtct
tcaaatacgtcagacccagaatcaccaatatcaccattattgacttctgatcccaaaaat
gagcgctcccactcgaagactttcagtcgccctcctgatatatttgatagtttccacgct
gaggattccaggaagccacaaacaaaagcaccatctttttggaggcttgcagagcttagt
cttgcagaatatttttatgctctgttaggaagtgctggtgctgcttgctttggttcattt
aatcctcttcttgcttatacgatatctctaatagtagtggcgtactacaaaataggtgtc
catgatgtacatgatgaagtgaataagtactgctcattcattgttggcatggggataatc
actgtactagctaactttttgcagcacttctattttggtataatgggagagaaaatgact
gagcgtgtaagaaggatgatgttttcagcaattctgcgcaatgaagttggctggtttgat
gacgaagacaatagtgcagacatattgtcaatgagacttgcaaatgatgcaacatttgtt
cgcgctgctttcagcaacaggctttctatattcattcaggacacatctgccatttttgtc
gcacttcttcttggtatgttactacaatggcgtgttgctcttgttgcactggcaactttg
cccatccttatcatttccgcggttgcacagaaaatgtggctttctggcttttccagggga
atccaggagatgcacaggaaagcttctttggttcttgaagatgctgtgaggaatatctat
actgtggtggcattctgtgctggtaacaaaataatggaactttatagattgcagcttgga
gatattctcacgaaaagctttattcatggaatgggcattggtgttgcctttggcttctct
cagttccttcttttcgcgtgcaatgcacttctgttgtggtatacagccgctgctgtgaag
gatggacatcttagtttggtaactgctctcaaagaatacattgtcttctcttttgcgact
tttgcactggtggaaccatttggccttgccccctatattctgaaacgccggaaatccctg
acctcagtatttgagattattgatcgtgtacccaagattgatccagatgatgccagtggc
ctgaaaccccctaacgtgtatgggagcattgagttcaggaatgttgatttttgcaatcct
acgcgccctgagatgatggttttgagtaattttagtctcagagtcaatggaggacaaact
gttgccgtggtaggtgtatcagggtctgggaagagcacaatagtttctttgatagagagg
ttctatgatccaaatgccgggcaagttttgttggatggccgtgatttgaaattgttcaac
ttgagatggctgcggagtcacatggggctggttcctcaggaccctgttacattttcgaca
accataagagaaaacataatatatgcaaggcacaatgcaaccgaatctgagatgaaagaa
gctgccagaatcgcgaatgcccatcacttcattagcagcctgcctcatggttatgacaca
catgtgggaatgcgtggggtggatttgactcctgggcagaagcagcggattgccattgct
cgtgtggtgttgaagaatgcacccattttactgcttgatgaggccagctctgctatcgaa
tctgagtcgagtagagtggtccaggaagcccttgacaccttgatcatggggaacaagaca
acggttctcatcgcacacagggcggcgatgatgaaacatgtggataacattgtcgtgttg
aatggtggtaggattgtcgagcagggatatcatgattcactggtgcagttgaatgctttg
tatgtgaagttgatgcaacctcacttcagcaaagggttccgtcagcgtagactaatatag
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