Panicum virgatum (switchgrass): 120678667
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Entry
120678667 CDS
T07260
Name
(RefSeq) ABC transporter B family member 1-like isoform X1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120678667
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120678667
04147 Exosome [BR:
pvir04147
]
120678667
04090 CD molecules [BR:
pvir04090
]
120678667
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120678667
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120678667
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120678667
CD molecules [BR:
pvir04090
]
Proteins
120678667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
Zeta_toxin
AAA_16
RsgA_GTPase
AAA_29
nSTAND1
APS_kinase
AAA_25
AAA_5
DUF6264
SbcC_Walker_B
DUF87
AAA_30
AAA_15
Rad17
Motif
Other DBs
NCBI-GeneID:
120678667
NCBI-ProteinID:
XP_039815877
LinkDB
All DBs
Position
6N:53027975..53034582
Genome browser
AA seq
1344 aa
AA seq
DB search
MSSAAAADPEEIRARVVVLHADAADEWARPELEAFHLPSPSHQPPGVAAATTAPPPPPPP
LETEQQPSNARPSSNSKPSPPAALRDLFRFADSLDCVLMLVGTLGALVHGCSLPVFLRFF
ADLVDSFGSHADDPDTMVRLVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIR
YLDAALRQDVSFFDTDVRASDVIYAINADAVIVQDAISEKLGNLIHYMATFVAGFVVGFT
AAWQLALVTLAVVPLIAVIGGLSAAALAKLSARSQDALSNASSIAEQALAQIRIVQAFVG
EERAMRAYSAALAAAQRIGYRSGFAKGIGLGGTYFTVFCCYGLLLWYGGHLVRAHRTNGG
LAIATMFSVMIGGLALGQSAPSMAAFAKARVAAAKIIRIIDHKPAVDGEGGGVELESVTG
RVEMRGVDFAYPSRPDVPILRGFSLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPSAGQ
ILLDGHDLKSLKLRWLRQQMGLVAQEPTLFATSIKENLLLGRDSVSATQAEMEEAARVAN
AHSFIIKLPDGYDTQVGDRGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKL
VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQGGAVSEMGTHDELMAKGEHGGTYAKL
IRMQEQAHEAALVNARRSSARPSSARNSVSSPIITRNSSYGRSPYSRRLSDFSTADFSIH
DHHHQHQPPVVAFRAGASSFLRLARMNSPEWGYALLGSLGSMVCGSFSAIFAYVLSAVLS
VYYAPDPRYMERQIAKYCYLLIGMSSAALVFNTVQHVFWDAVGENLTKRVREKMFAAVLR
NEIAWFDADENASARVAARLALDAQNVRSAIGDRISVIVQNSALMLVACTAGFVLQWRLA
LVLLAVFPLVVGATVLQKMFMKGFSGDLEAAHARATQIAGEAVANLRTVAAFNAERKITV
LFEANLRGPLRRCLWKGQIAGSGYGVAQFLLYASYALGLWYAAWLVKHGVSDFSRTIRVF
MVLMVSANGAAETLTLAPDFVKGGRAMRSVFETIDRKTEVEPDDVDAAPVPERPRGEVEL
KHVDFAYPSRPEVQVFRDLSLRARAGKTLALVGPSGCGKSSVLALVQRLYEPSSGRVLLD
GKDVRKYNLRALRRAMAVVPQEPFLFAASIHDNIAYGREGATEAEVLEAAAQANAHKFIS
ALPEGYRTQVGERGVQLSGGQRQRIAVARALVKQAPILLLDEATSALDAESERCVQEALE
RAGAGRTTIVVAHRLATVRNALTIAVIDDGKVVEQGSHSHLLKHHPDGCYARMLQLQRLT
GAGAGAGPGPSSSSLASASPSNGI
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcgccgccgctgccgacccggaggagatcagggcgcgcgtcgtcgtcctccat
gccgacgccgccgacgagtgggcgcgcccggagctcgaggccttccacctgccctcccca
tcccaccagccgcccggagttgctgctgctaccactgctccaccacctcctccgcctcct
ctggagaccgagcagcagccttccaatgccaggccgtccagtaacagcaagccctccccg
ccggccgccctgcgcgacctcttccgcttcgccgacagcctcgactgcgtgctcatgctc
gtcggcaccctcggcgcgctcgtccacggctgctcgctccccgtcttcctccgcttcttc
gccgacctcgtcgactccttcggctcccacgccgacgacccggacaccatggtccgcctc
gtcgtcaagtacgccttctacttcctcgtcgtcggggcagcaatctgggcatcctcatgg
gcagagatctcttgctggatgtggaccggcgagcgccagtccacccggatgcggatccgc
tacctcgacgccgccctccgccaggacgtctccttcttcgacaccgacgtccgcgcctcc
gacgtcatctacgccatcaacgccgacgccgtcatcgtgcaggacgccatcagcgagaag
ctcggcaacctcatccactacatggccaccttcgtcgccggcttcgtcgtcgggttcacc
gccgcctggcagctcgcgctcgtcacgctcgccgtcgtgccgctcatcgccgtcatcggg
ggcctcagcgccgccgcgctcgccaagctctccgcccggagccaggacgcgctctccaac
gccagcagcatcgccgagcaggcgctggcgcagatacggatcgtgcaggccttcgtcggc
gaggagcgcgccatgcgggcctactcggcggcgctcgccgcggcgcagaggatcggctac
cgcagcggcttcgccaaggggatcggcctcggcggcacctacttcaccgtgttctgctgc
tacgggctgctgctctggtacggcggccacctggtgcgcgcccaccgcaccaacgggggc
ctcgccatcgccaccatgttctccgtcatgatcgggggcctggccctcgggcagtcggcg
ccgagcatggccgccttcgccaaggcgcgcgtggcggccgccaagatcatccgcatcatc
gaccacaagccggcggtcgacggcgagggcggcggcgtggagctggagtcggtgacgggg
cgggtggagatgcggggcgtggacttcgcgtacccgtcgcggccggacgtgcccatcctg
cgcggcttctcgctgagcgtgccggccgggaagaccatcgcgctggtggggagctccggc
tccgggaagagcacggtggtgtcgctcatcgagaggttctacgaccccagcgcagggcag
atcttgctggacgggcatgatctcaagagcctcaagctccggtggctccggcagcagatg
ggcctggtggcgcaggagccgacgctgttcgcgacgagcatcaaggagaacctgctgctg
gggcgggacagcgtgagcgcgacgcaggcggagatggaggaggcggcccgggtggccaac
gcccactcattcatcatcaagctcccggacggctacgacacgcaggtcggcgatcgcggt
ctccagctctccggcggtcagaagcagcgcatcgccatcgcccgcgccatgctcaagaac
ccggccatcctgctgctggacgaggccaccagcgcgctggactcggagtcggagaagctg
gtgcaggaggcgctggaccgcttcatgatcgggcgcaccaccctggtgatcgcccaccgc
ctctccaccatccgcaaggccgacctggtggccgtgctgcagggcggcgccgtctccgag
atgggcacccacgacgagctcatggccaagggggagcacggcggcacctacgccaagctc
atccgcatgcaggagcaggcgcacgaggccgccctcgtcaacgcccgccggagcagcgcc
aggccctccagcgcccgcaactccgtcagctcacccatcataacgcgcaactcctcctac
ggccgctccccctactcgcgccgcctctccgacttctccactgccgacttctccatccac
gatcaccaccaccagcatcagccgccggtggtggccttccgcgccggcgccagctccttc
ctccgcctcgccaggatgaactcgccggagtggggctacgcgctgctcggctccctgggc
tccatggtctgcggctccttcagcgccatcttcgcctacgtcctcagcgccgtgctcagc
gtctactacgcgccggacccgcgctacatggagcgccagatcgccaagtactgctacctc
ctcatcggcatgtcgtcggccgcgctggtgttcaacacggttcagcatgtgttctgggac
gccgtcggcgagaacctcaccaagcgcgtgcgcgagaagatgttcgccgccgtgctccgc
aacgagatcgcctggttcgacgccgacgagaacgccagcgcgcgcgtcgccgcccggctc
gcgctcgacgcccagaacgtgcgctccgcaatcggggaccgcatctccgtcatcgtccag
aactcggcgctgatgctcgtcgcctgcaccgcgggcttcgtcctccagtggcgcctcgcc
ctggtgctcctggctgtgttcccgctcgtggtcggcgccaccgtgctgcagaagatgttc
atgaagggcttctcgggggacctggaggccgcgcacgccagggccacgcagatcgccggc
gaggccgtcgccaacctgcgcaccgtggcggccttcaacgcggagcgcaagatcacggtt
ctcttcgaggccaacctgcgcggcccgctgcggcggtgcctgtggaaggggcagatcgcc
ggcagcggctacggcgtggcgcagttcctgctgtacgcgtcgtacgcgctggggctctgg
tacgcggcgtggctggtgaagcacggcgtctccgacttctcgcgcaccatccgcgtcttc
atggtgctcatggtgtccgccaatggcgccgccgagacgctgacgctggcccccgacttc
gtcaagggcggccgcgccatgcgctccgtgttcgagaccatcgaccgcaagacggaggtg
gagccggacgacgtggacgcggcgcccgtgcctgagcggccgcgcggcgaggtggagctc
aagcacgtggacttcgcctacccgtcgcggccggaggtgcaggtgttccgggacctgagc
ctccgtgcgcgcgccggcaagacgctggcgctggtggggccgagcgggtgcggcaagagc
tcggtgctggcgctggtgcagcgcttgtacgagcccagctccgggcgcgtgctcctggac
ggcaaggacgtgcgcaagtacaacctgcgggcgctgcggcgcgccatggcggtggtgccg
caggagcccttcctgttcgcggcgagcatccacgacaacatcgcctacgggcgcgagggc
gcgacggaggcggaggtgctggaggcggcggcgcaggccaacgcccacaagttcatctcg
gcgctgccggaggggtaccggacgcaggtcggggagcgcggggtgcagctgtcgggcggg
cagcggcagcggatcgccgtggcgcgcgcgctggtgaagcaggcgcccatcctgctgctg
gacgaggccaccagcgcgctggacgccgagtcggagcggtgcgtgcaggaggcgctggag
cgcgcgggggccggccgcaccaccatcgtggtggcgcaccgcctcgccaccgtgcgcaac
gccctcaccatcgccgtcatcgacgacggcaaggtggtggagcaggggtcgcactcgcac
ctgctcaagcaccacccggacggctgctacgcgcggatgctgcagctgcagcggctcacc
ggtgctggtgctggtgctggacctggaccctcgtcgtcctcgttggcatcggcgtcgccg
tccaacgggatctag
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