Panicum virgatum (switchgrass): 120682889
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Entry
120682889 CDS
T07260
Name
(RefSeq) regulator of nonsense transcripts 1-like
Organism
pvir
Panicum virgatum (switchgrass)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
AAA_30
ResIII
Viral_helicase1
DEAD
Helicase_RecD
AAA_22
AAA_24
PIF1
nSTAND3
PhoH
AAA
AAA_16
Transposase_32
UvrD_C_2
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
120682889
NCBI-ProteinID:
XP_039820846
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Position
7N:complement(115596..118654)
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AA seq
880 aa
AA seq
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MLLSKRGLNSSDQIIKAGSFCTILVVTLVNDHVEDYLASMHVWLSQSPYGGSPNDQTSYQ
VMHLTNLITFAHSWEVITGGFKENPHIVDAMLARNENVDNMLQADGKFTDKDFGLNKSQR
DAVESCFSASECSKHSVHLIWGPPGTGKTKTASVFLLMILKSLRTHRTLVCAPTNTALVQ
LASRFVCLLEESTETSYLLADVIMFGSNKHMDTNNNLSKILLDHRAKEKHARNKLLENAK
LVFCTPCGSSRLTKNQQYDTLVIDEAAYLKECESLIPLAICGIKHVVLIGDDKQLQPVVK
SPIAEEAKYGRSLFERLSEIGHHKLLLDEQYRMHPHISNFPNKTFYSGMIKDRTEASGVP
NIFIGHNFDHYSFINVREGTEKQIGMSLVNEAEAIVAETIVDRLAKTCTYKEEKISVGVV
SLYAAQVNDLEERLDRFKEHEFLSVKVQTVDSCQGDEKDIIILSMVRCNHGGNIGFLDSD
RRANVALTRARKHLWILGHETTLLRSNSIWSKVVQDAKEHNLLFHAHLDMHLAEAISHFR
KFAIYAQSTGDILIEATINEADRRVDATIEEENIGSLPGDMQRNSDMGQDQVSSLSLPQC
DQFAVNSPVGTAIDEANVEFSPSHVHSRKRPCPFCKDQLAVPEVAQAIEATVEDNDVIIE
ELTQLAEGSNAMKDNKRAKKANPYEQARSARDGRFWSTEQEKLYNNVYKQKDFADNRWID
WESMKQSKEMLDVEKKCKNINLRKLMGIRNDWHEETVKQFFSTFYINPSRTSLTWMSGIN
KKITVTKEFCEKLLLGDPQHSSKIEDKLTHTQEVMLNNFEKDGLFSAADRLVRKTIYPRA
GSRDKTHKDIRVILYHILTEKPFDVVDMMFREMEKNSHRS
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgttattgtcaaagaggggattgaactcaagcgaccaaattatcaaggctggctccttt
tgcactatcctagtggttaccttggtcaacgaccatgtagaggactatctagcatcaatg
catgtctggctgtcgcagtcaccatatgggggcagtccaaatgaccaaacttcctaccaa
gttatgcacctgactaatctgatcacttttgcacatagttgggaagtcattacaggaggt
ttcaaagaaaatccacatatagtcgatgccatgttggctagaaatgagaatgtggacaat
atgctgcaggctgatggaaaattcacagataaggattttggattgaataaatcacagaga
gatgcagtggaaagttgcttttcagcctctgaatgttcaaagcattctgtacatctaatt
tgggggccacctggcacaggtaaaactaaaacagcttcagtgtttctgcttatgattcta
aagtctctaaggacacatagaactcttgtatgtgctccaaccaacacagctctcgtacaa
ttggcttctcgttttgtttgtctacttgaagagtccactgaaaccagctatttacttgcg
gacgtcattatgtttgggagtaataagcatatggacactaataataacctatcaaaaatt
ttattggaccatcgagcaaaggaaaaacatgctaggaacaaactcttggaaaatgcaaaa
cttgtattttgcactccttgtggttcatctaggctcacaaaaaatcagcaatacgacacc
ttggttattgatgaggcagcatacctaaaagaatgtgagtcgctgatccctctcgcaatt
tgtgggataaaacatgtggtgcttattggggatgacaagcagctacaaccagtggttaag
agcccgattgctgaagaggctaagtatggacgaagcctgtttgagagattgagtgaaatt
ggccaccacaagctgttactcgatgagcaatatagaatgcaccctcacatcagcaacttt
ccaaataaaacattttatagtggaatgattaaagatcgcactgaggctagtggagtgccc
aacatttttatcggtcataattttgatcattattcattcattaatgttagagaaggtaca
gaaaaacaaattggaatgagtttagtaaatgaggctgaagctattgttgcagagacgatc
gttgacagacttgctaaaacatgcacctataaggaggagaaaatcagtgttggtgtagta
tctctatatgcagcccaagtgaatgatttggaagaaagacttgatagatttaaggaacat
gagtttctttctgttaaagtacaaaccgttgattcatgtcaaggtgatgagaaggacata
ataatactttcaatggttcgatgcaatcatggtgggaacataggctttctcgattctgat
aggagagctaatgtggccttgacaagagcaaggaaacacctttggatccttggacatgaa
acaactctcctgagaagtaattcaatatggtctaaggtagtccaagatgcaaaggaacac
aatttgctctttcatgctcacttagacatgcatcttgctgaagccattagtcatttcaga
aagtttgctatatatgcacagagcacaggtgacatcctgatagaggccacaatcaatgaa
gcagacagacgagtagatgcaacaatagaggaagaaaacattggttccttgcctggggat
atgcaaagaaattcagatatgggtcaggaccaagtttccagtctatctctaccacaatgc
gaccaatttgcagttaacagcccagtagggaccgcaatagatgaagccaacgttgaattc
tcacccagtcatgttcattcaaggaagaggccctgtcctttctgtaaagaccaacttgcc
gtaccagaagttgcacaggcaatagaagctacagtagaggataatgacgtgattatagaa
gagctgacccaactagctgagggatcaaatgcaatgaaggacaataaaagagcaaaaaag
gcaaacccctacgagcaggccagatctgcaagagatggtcgtttttggtccaccgagcaa
gagaaattgtacaataatgtttataaacagaaggattttgcggacaacagatggatcgat
tgggaaagcatgaagcagtccaaagagatgcttgatgttgagaaaaaatgtaagaacatt
aatcttcgtaaactgatgggtataagaaatgattggcatgaagaaacagtcaaacagttc
ttctcaacattctacataaatccaagtaggacctccctgacatggatgagtggcataaat
aagaagattactgtcactaaggaattttgtgagaaattactacttggtgatccccaacac
agtagtaagattgaggataagttaactcacacacaagaagtcatgctcaacaattttgaa
aaggatgggctttttagtgcagcagatcgtctggtgagaaaaaccatctaccctagggct
ggaagtagagataagactcacaaggacattagggtcatactatatcatattttgactgag
aagcctttcgacgttgtagacatgatgttcagggagatggaaaaaaactctcaccgatca
tag
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