Panicum virgatum (switchgrass): 120683495
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Entry
120683495 CDS
T07260
Name
(RefSeq) organic cation/carnitine transporter 4-like
KO
K08202
MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120683495
Transporters [BR:
pvir02000
]
Solute carrier family (SLC)
SLC22: Organic cation/anion/zwitterion transporter
120683495
Major facilitator superfamily (MFS)
Organic acid transporters
Organic cation transporter (OCT) family [TC:
2.A.1.19
]
120683495
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sugar_tr
MFS_1
MFS_1_like
TMEM234
DUF1304
Motif
Other DBs
NCBI-GeneID:
120683495
NCBI-ProteinID:
XP_039821505
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Position
7N:46715741..46726819
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AA seq
515 aa
AA seq
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MSTEPLLPGAKAAGRRRVGIDEALSAHAGEFGRWQLRHFVLVSAAWALEALHTMVMIFAD
REPAMACAAAGGAGGGDPCAGAAAGWEWAGGAASSTVAEWGLVCGERYKVGLVQAVFFAG
CMIGAGVFGHLSDSFLGRKGSLQVVCVLNAAFGLITALAPNYWAYAALRLLTGFSTGSVG
VLAFILATEPIGPSRRGAAGMSTFYFFSGGIAALAGVAALFPRSWRTLYVVTSLPSLAFA
AAVVPFVSESPRWYLVRRRADDAMRVVRAIAAANGRTVPDDVALKLDDEDDEEKSVDGSA
SSGSIVDVFRSRTTRVRLVLSVLINLLSSVVYYGLSLNVVNLKTNLYVSVVANSLAEMPA
YLLTALLLDRFGRKPLAIGTMLLAGVFCTAGSLIAGAGIMRVVRMACGVVGIFGVAATYN
LLFIYTAELFPTVVRNAALGCTAQAAQMGAIVAPLVVVLGERVPFAVFGASGIVGGLLVF
YLPETKNKPLYDTMAGLEEGEKKSLLGLKGVRSTS
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgtccacggagcccctcctccccggcgcgaaggcggcgggccggcggcgcgtgggcatc
gacgaggcgctgtcggcgcacgcgggggagttcgggcggtggcagctgcggcacttcgtg
ctggtgtcggcggcgtgggcgctggaggcgctgcacaccatggtgatgatcttcgcggac
cgggagcccgccatggcctgcgccgcggcgggcggcgccggcggtggcgacccgtgcgcg
ggcgccgcggccggatgggagtgggccggcggcgccgcgtcgtccaccgtcgccgagtgg
gggctcgtctgcggcgagcgctacaaggtcgggctcgtccaggccgtcttcttcgccggc
tgcatgatcggcgccggcgtgttcgggcacctctcggactcgttcctgggccggaagggc
tcgctgcaggtggtctgcgtcctcaacgccgccttcggcctcatcaccgcgctggcgccc
aactactgggcctacgccgcgctgcgcctcctcacgggcttcagcaccggcagcgtcggc
gtcctcgccttcatcctcgccaccgagcccatcggcccctcccgccgcggcgccgcgggc
atgtccaccttctacttcttctccggcggcatcgccgcgctcgccggcgtcgccgcgctc
ttcccgcgctcctggcggacgctctacgtcgtcacctcgctcccgtcgctcgccttcgcc
gccgccgtcgtgcccttcgtctccgagtccccgcgctggtacctcgtgcggcgccgcgcc
gacgacgccatgcgcgtcgtccgcgccatcgcggccgccaacggcaggaccgtcccagac
gacgtcgcgctcaagctcgacgacgaggacgacgaagagaagagcgtcgacggctcggcg
tcctcgggctccatcgtcgacgtgttccggtcgcggaccacgcgggtccgcctcgtgctc
tcggtgctcatcaacctcctctcgtcggtggtgtactacgggctcagcctcaacgtggtc
aacctcaagaccaacctctacgtcagcgtcgtcgccaactcgctcgccgagatgcccgcc
tacctgctcaccgcgctgctcctcgaccgtttcgggcggaagccgctcgccatcggcacc
atgctgctcgccggcgtcttctgcaccgccgggagtctcatcgccggcgcaggcatcatg
agggtggtgcggatggcgtgcggcgtggtgggcatcttcggcgtggcggcgacgtacaac
ctgctgttcatctacacggcggagctgttcccgacggtggtgcggaacgcggcgctgggg
tgcacggcgcaggcggcgcagatgggcgccatcgtggcgccgctggtggtggtgctcggg
gagagggtgccgttcgcggtgttcggcgcgtcgggcatcgtcggcgggctgctggtcttc
tacctgccggagacgaagaacaagcccctgtacgacaccatggccgggctggaggaaggg
gagaagaagagccttctgggattgaaaggtgtcagatcgacgtcgtga
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