Panicum virgatum (switchgrass): 120690234
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Entry
120690234 CDS
T07260
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein NUP1-like
Organism
pvir
Panicum virgatum (switchgrass)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pkinase
EF-hand_7
EF-hand_1
EF-hand_6
PK_Tyr_Ser-Thr
EF-hand_5
EF-hand_8
EF-hand_9
EF-hand_4
AIF-1
Kdo
Kinase-like
Motif
Other DBs
NCBI-GeneID:
120690234
NCBI-ProteinID:
XP_039828751
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Position
9N:complement(4927806..4940333)
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AA seq
1976 aa
AA seq
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MYPSPYAGSGAGAGGKIRRRPPTRAASTPYERPPAAAAAHRLAAAAAAASASSAPGGESG
GGGGGWVSRLVDPASRLIAGGAARLFGSVFRKRLAPPPAPSLQLSTHGRNNDPTPDFPDS
TNVDSPSLPEGAIDKGKNIAATSDDKALSEVEHLLMRKTFTRVEFDRLTDLLRARTIEPD
PPKSIVFREENNEGIRIDAIGGSTSHQMAAESPTVKVHSHDVKSPAELAKQYMSSRYSRE
PPSSSLRSRLFLENKGEASNDAYDRRPGPPIVQAPIEFGNENPGLPVNGYVTSGLRGRSA
IYRMSRSPYFKGSSSSDVNTFSLSQRAQSSHIGGRQVLKRRGSDLENEIGSIGPIRRIRQ
KSNMMSPFRDARAISRGNLLTSRTSGSDFTEDSTSIQESPSSKRLLLGTTSVRPQESHKN
GDNKPSDNTPSIPAQSNKMAEKIFEQLNIIAPSPKEKQSGQQPVTGNTSNSMSKKPVLQD
IGPSCMYDPSSSLKFQDLDGANGPLDPDLNGSLLKKDKLNMIEGGFSKVASSDKPTFLGN
SVSASTSRKPGFKMAVIEDLTELDDDLEVVPIPSKSLSSKIEVKTTEQKSDSTRKEQKVG
QNILEQKVESNLMKNMVDSPVSEQHVASLSKSVSSSGGLFSSNDPAKAVPHTSVDNNAGF
AFSNAPPGTRPATSVSVMPLASVNDDKQTGASNTSVGLKQSIAPDLETPNVKNKSTFGQS
VTKLTILDRTSSERGDKTEKAEDVIKSSDKVVPSTASATLNAPLHFASAASTSASLSNGF
SNSSSPKLPTVPPTDKPAVSSAASTMFAAYSSSPAISSSSPAFTAFNFSSSTSAGFSMVS
SAKSDGTTAEVKPASILSFGIGGAADEVKSTAPDSASKPSSKLLSSPISSSPITSGPTFS
LVAASSDAAGAATAAPSNTSTAPGIRAASTAPFTFPSSGNSLFGFNSPAHSTGLSTSVTS
STSQPSAASALFSSKLTQPEDTMQQPSQSPKPQFGSPFPSVTPGVGASSSGSGTFSFGIG
ASSTGSGTMSFGAGASSSTPGTSSAFGAAAPSTGPGIFSFGAGSSSSGSGAVPFGVGATS
SGPGTVSFGVGAASSGPGAVSFGAGSSSSGSGTVTFGVGAASSGPGTVSFGAGASSSGPG
TISFGAGASSSGPGTVSFGAGASSSGPGTVSFGATTSTSGGFGNSPFGAGAPFANPFSSS
SGTGFTLSSASSSAGASTVASTSVFASTTAASSASTFSNPFSSSSSPPSTFTFGQSASSG
SAFAFGAQPAPTFSSQPPVFSFTTANTSMNSSTPQPAFGMTNTNTAFGMGSPGNDQMNED
SMANDTNQAAPAPIFGSPFGQQNSTPAAPAFGAPAVQPGGAFQFGGQQQAAQQNPSFPAA
GSLEFQGGNFSLGSGGGGGDKSNRRMIKVKRVPKKRXAPQDSTNHISWLACKPSPPRSSE
PAPKPAKQDAKPAAAAAAAAAAATATNPSSNSSGEAPRPRPKVPQVKRVSSAGLLVGSVL
KRKTENLKDKYSLGRRLGQGQFGTTYLCVERSTGKEFACKSILKRKLVTDDDVEDVRREI
QIMYHLAGHPNVISIRGAYEDAVAVHLVMELCAGGELFDRIVQRGHYTERKAAELARVIV
GVVEVCHSMGVMHRDLKPENFLFVDQKEEASLKTIDFGLSIFFRPGQIFTDVVGSPYYVA
PEVLKKKYGPEADVWSAGVIIYILLCGVPPFWAENEQGIFEEVLHGKLDFESEPWPSISE
GAKDLVRRMLIRDPKKRLIAHEVLRHPWVQVGGLAPDKPLDSAVLSRMKQFSAMNKLKKM
ALRVIAENLSEDEIAGLKEMFKMIDTDNSGTITFEELKVGLKKVGANLQESEIQALMQAA
DVDNSGSIDYGEFIAATLHLNKVEREDHLFAAFQYFDKDGSGYITADELQLACEEFGLGD
VKLEDMIGEVDQDNDGRIDYNEFVAMMQKPTLGLPKKAGGLQNSFSIGFREALRIQ
NT seq
5931 nt
NT seq
+upstream
nt +downstream
nt
atgtacccgagcccgtacgccggctccggcgcaggcgccggagggaagatccggcgccgc
ccgccgacccgcgccgcctccacgccctacgagcggccccccgccgccgccgccgcgcac
cgcctcgcggccgctgccgcagcggcgtccgcatcctcggcgccaggaggggagagcggc
gggggaggcggcggctgggtgtcccggctcgtggacccggcctcccgcctcatcgcgggc
ggcgccgcgcggctcttcggctcggtgttccgcaagcgcctcgccccgccgccggccccg
tcgctgcaattgtcaactcacggaagaaataatgatccaacaccggacttccctgattca
actaatgttgattcaccttcactaccagagggtgcaattgataaagggaagaacatagct
gccacatcagatgacaaagcattgtctgaagtagagcacttgttaatgcggaagacattc
actagggttgagttcgatcgtcttacagacttgttgcgcgcaagaaccattgagcctgat
ccacctaaatctattgttttccgtgaggaaaataatgaaggtatcagaattgatgcaata
ggaggttccacatcacaccagatggctgcagaatctccaactgttaaagtacatagtcat
gatgttaagtctcctgcagaactcgcgaaacaatatatgagctcccgctattcgagggaa
cctccatcaagtagtctgcgaagccgattgtttcttgagaacaaaggtgaagcaagcaac
gatgcctacgataggagacctggaccacccattgttcaggcaccgattgaatttgggaat
gaaaaccctgggctccctgtaaatggctatgtgacttcaggattacgggggcggtcagcg
atatatagaatgtcccgctctccttattttaagggttcgagctctagcgatgtgaacaca
ttttcattgtcccaacgagcacaaagttcgcatattggtggcaggcaggtcttaaaacga
agagggagtgacttagagaatgaaattggatctataggtcccattcgtagaattcggcag
aagtcaaatatgatgtctccatttagagatgctcgtgcaatttctcgaggaaaccttctt
actagccgtacaagtggttctgatttcactgaagacagcacatccatccaggaatctccg
agctcaaaaaggctattacttgggacaacatctgtaagaccccaagaatcccataagaat
ggagataataaacctagtgataacactccatccataccagctcaatcaaacaaaatggca
gagaagatatttgagcagcttaatataatagctccatctcctaaagagaagcagtctgga
cagcaacctgtaactggtaatactagtaattcaatgtcgaagaaacctgttttgcaagat
attgggccaagctgtatgtatgacccatctagttccctgaaatttcaagatttggatggt
gcaaatggaccccttgacccagacttgaatggttccctgttgaagaaagacaagctaaat
atgatagaaggtggattttcaaaagttgcttcgtctgataaacctacctttttggggaac
tcagtttctgcttccacatcacggaaaccaggctttaaaatggctgtgatagaggactta
acagagttggatgatgacctggaggtggtccccattccatccaagagtctatcaagtaag
atagaggttaaaacaactgagcagaaatctgactcaactagaaaagagcagaaagttgga
caaaatatattagagcaaaaggttgaatcaaacttaatgaagaacatggttgattctcca
gttagtgaacagcatgtagcatcattatctaaatctgtctcttcatctggtggtttgttt
tcatcaaatgatcctgcaaaagcagttcctcatacttctgtggataacaacgctggtttt
gcattctcaaatgcgcctcctggtacccgtcctgcaactagtgtgtcagtaatgccgctt
gcttcagttaatgatgataaacagactggtgcttcaaatactagtgttggcctcaagcag
tctattgcaccagatttggaaacaccaaatgttaaaaacaaatcaacatttggacagagt
gtcaccaagctcacaatattggacagaactagttctgagagaggtgataaaacagaaaaa
gcagaagatgtcattaaatcatcggacaaggtggtgccatcaaccgcgtcagcaaccctt
aatgcccctctccattttgcttctgctgcatcaacttctgcgagcctgagcaatggcttc
tcaaactcttcatcaccaaagctcccaactgtcccacctactgataaacctgctgtcagc
tcagctgcttccaccatgtttgctgcatacagtagcagtccagctatttcatcatcatct
cctgcatttacagcatttaatttttcttccagtacttcggctggcttttcaatggtatca
tcagctaaatcagatggcacaactgccgaggtaaagccagctagcatcttatcatttggg
ataggaggtgctgcagatgaagtgaaatctacagccccagattcagccagcaaaccatca
tcaaaacttctttcttcacctatttcaagttctcccatcacatctggacctactttctct
ctagttgcagcttcaagcgatgctgcaggcgctgcaacggctgcgccatctaatacttcc
accgctcctggtattcgggctgcttcaaccgcaccatttacatttccaagctctggaaac
agcctttttgggttcaactcgccagcccactctactggcctcagcacatcggttactagc
agtacctctcaaccatctgctgctagcgcactctttagtagtaagctgacgcagccagag
gacacaatgcaacaaccatcccagagtccaaaaccacaatttggctcaccattcccgtcc
gtgactcctggtgttggagcttcatcatctggatctgggaccttctcttttggaattgga
gcttcttcgactggttccgggaccatgtcttttggtgctggagcttcatcgtcaacacct
ggaacttcatcagcattcggggcagcagctccctcaacaggacctggtattttctctttt
ggggcaggatcttcctcatcaggatctggggctgttccctttggagttggagctacctca
tctggtcctgggactgtgtcttttggagtaggagctgcctcatctggacctggggccgtg
tcttttggggcaggatcttcctcatcaggatctgggactgttacctttggagttggagct
gcctcatctggacctgggactgtatcttttggagcaggagcttcctcatctggacctggg
accatctcatttggagcaggagcctcctcatctggacctgggaccgtgtcttttggagca
ggagcttcctcatctggacctgggaccgtctcatttggagcgacaacatccacatcgggg
ggatttggcaattcaccatttggggctggggctccatttgcgaacccattcagctctagc
tcaggtactgggtttacattgtcttcagctagctcttctgctggtgcatcaacagtggcc
agtacaagtgtatttgccagcaccaccgctgcttcatcagcctccactttcagcaaccct
ttcagctcaagttcatcccctccaagcacatttacgtttggacaatcggcctcttctggc
agtgcttttgcatttggagcgcagcctgctccaactttctcatctcagcctcctgttttc
tcatttaccacagcaaacacaagcatgaactcgtctactccgcagcctgcatttggaatg
acaaatacgaacacagcctttggcatgggctcccccggaaatgatcagatgaatgaagac
agcatggcaaatgacacgaaccaagcagcaccagcaccgatatttggttcaccctttgga
cagcagaatagtacccccgctgccccggcatttggcgctcctgcagtgcagccaggtgga
gcttttcagttcgggggccaacaacaagctgcacagcagaatccgtccttcccagctgct
ggcagtctagagtttcagggtgggaatttctctttgggcagcggtggcggcggtggtgac
aagtcgaacagaagaatgatcaaggtcaaaagggtacctaagaagagatgagcccctcag
gacagtacaaaccacatctcatggctggcgtgtaaaccaagccccccaaggtcatcggag
ccggcgcccaagcccgcgaagcaggacgccaagccggccgccgccgccgccgctgccgct
gccgctgccactgccaccaaccccagctccaactcatccggcgaggcgcccaggccgcgg
cccaaggtgccgcaggtgaagcgcgtgtccagcgccgggctgctcgtcggctccgtgctt
aagcgcaagacggagaacctcaaggacaagtacagcctggggcgccggctcgggcagggc
cagttcggcaccacgtacctctgcgtggagcggagcaccgggaaggagttcgcgtgcaag
tccatcctcaagcggaagctcgtcaccgacgacgacgtcgaggacgtgcgccgggagatc
cagataatgtaccacctggccgggcaccccaacgtgatctccatccgtggcgcctacgag
gacgccgtggccgtgcacctcgtcatggagctctgcgccggcggcgagctgttcgaccgg
atcgtgcagagggggcactacaccgagcggaaggccgccgagctcgccagggtcatcgtc
ggcgtcgtcgaggtgtgccactccatgggcgtaatgcatcgggatctcaagccagagaac
ttcctcttcgttgaccagaaggaggaggcctctctcaagacaattgactttggtctgtcc
attttctttcggcctggtcaaatattcactgatgttgtcggtagcccttactacgtggca
ccagaggtcctcaagaagaaatatggtcccgaggcagatgtttggagtgccggtgtaatc
atttacatcttgctttgtggtgtgccaccattctgggcagagaacgagcagggtatattt
gaagaggttttacatgggaaacttgatttcgagtcagagccgtggcctagtatctctgaa
ggcgccaaagatcttgtgagacgaatgcttattagggacccaaagaagagactgattgct
catgaagttctacggcatccatgggtccaggttggtggcctggctcctgataagccgttg
gattctgctgttctgtcccgtatgaaacagttctcagctatgaataagctgaaaaagatg
gctcttagggtgattgccgagaacctatccgaggatgagatcgccggcctgaaagaaatg
ttcaagatgatagacacagacaacagcgggaccatcaccttcgaagagctgaaggtcggc
ttgaaaaaggttggcgccaatctccaggagtccgagatccaggcgctcatgcaagcagcg
gacgtggataacagcggctcgatcgactacggcgagttcatcgcggcgacgctgcacctg
aacaaggtggagcgggaggaccacctgttcgcggcgttccagtacttcgacaaggacggc
agcgggtacatcaccgccgacgagctgcagctggcgtgcgaggagttcggcctgggcgac
gtgaagctcgaggacatgatcggggaggtggaccaggacaacgatgggcgcatagactac
aacgagttcgtggccatgatgcagaagcccacgctggggctccccaagaaggccggcggc
ctgcagaacagcttcagcatcggcttcagggaggcattgaggatacaataa
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