Panicum virgatum (switchgrass): 120701734
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Entry
120701734 CDS
T07260
Name
(RefSeq) ABC transporter B family member 11-like isoform X1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120701734
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120701734
04147 Exosome [BR:
pvir04147
]
120701734
04090 CD molecules [BR:
pvir04090
]
120701734
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120701734
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120701734
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120701734
CD molecules [BR:
pvir04090
]
Proteins
120701734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
AAA_29
AAA_16
ABC_ATPase
Zeta_toxin
RsgA_GTPase
AAA_21
APS_kinase
DUF87
AAA_30
DLIC
Motif
Other DBs
NCBI-GeneID:
120701734
NCBI-ProteinID:
XP_039841538
LinkDB
All DBs
Position
1K:complement(29134295..29153285)
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AA seq
1235 aa
AA seq
DB search
MHRLFAFADRRDAAMMAVGAAAAIANGLAMPLLTFLIGDLVDAFGAADRARVVHVVSKVA
VRFVYVAIASGVASFLQVSCWMVTGERQAARIRGLYLETILRQDISFFDVETSTGEIIER
MSSDTVLIQEASGEKVGKFLQLISTFLGGFIIAFARGWLLSLVMLSSIPLVVISAGAMSL
VISKLSNRSQMAYAEAGKVVEQTIGSIRTVVSFNGEKRAMDRYNEFLKTSYRSTVQQGIA
MGLGIGSLLLIVFCSYALAVWYGARLIIEKGYTGGYIINVIMAIMTGAMALGNSSSCLSA
FVSGRVAAYKMFETIYRTPEIVAHDKSGLVLENFMGNVELRDVHFSYPTRPEQSIFSGFS
ITIRTGTTMALVGESGSGKSTVISLVERFYDPQSGEVLLDGVNLKLLKLSWIRQKIGLVS
QEPILFTTTIRENIRYGKKGASEEEIRSATMLANATKFIDKLPNGLDTMVGEHGTQLSGG
QKQRIAIARAILKDPKILLLDEATSALDAESEHVVQEALNNIMVNRTTIIVAHRLSTVKN
ADTISVLHRGQLVEQGSPAELIKNPNGAYSQLIRLQEVNAKRNGAYADSSNRTRTASYTA
NNYISDQSSRKQSIERSMSINSPPDGSRRNSNTFSANEHEKIGDDDAKLGKKVLRRLLHL
HKPETKILVLGCTAAAANGAILPVFGLMISTAIRTFYEPPHKLQKDSVFWAEMYVTLGVL
SILIMPVQFSMFYMAGGKLIERIRALSFTQVVYQEIGWFDDPLNSSGAIGSRLSTDAASI
RGIAGDVLSLIVQNISTAIVGIVIAMVANWKLACIVVCFVPCVFAQSFAQARFMRGFSAD
AKKSYEQASTIASDAIGNIRTVASFCIEERIVENYRKKCEGPVKQGLRQGVISGAGYGFS
FAMLFCFYAISFYVGALFIHNGTADVGQVFKVFFALTMMAVGVSQSSSMARDFSKVEDAA
VSIFELIDRKSMIDASSEEGTTLDTVQGYIELQHVTFKYPARNDVQIFRDLCLRIPSGKT
VALVGESGSGKSTVISLVERFYDPDSGVILLDGKNLKSLKLSWLRQQLGLVGQEPVLFND
TIRANIAYGKEGEVSEEEIFAAAEAANAHRFISSLSSGYGTSVGERGVQLSGGQKQRIAI
ARAILRDPKVLLLDEATSALDAESEHTVQEALDRVMVGRTTVVVAHRLSTITGADKIAVI
KNGVVAEEGRHEQLLRAFPGGAYASLVALQSSRSS
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgcaccggctgttcgccttcgcggaccggcgggacgcggcgatgatggccgtgggcgcc
gccgcggccattgccaacgggctcgcgatgccgctgctcaccttcctcatcggcgacctc
gtcgacgcgttcggcgccgccgaccgcgcccgcgtcgtgcacgtcgtctctaaggtcgca
gtccgatttgtatatgtagcaatagcttctggagtggcctcctttcttcaggtgtcatgc
tggatggtgaccggagaaaggcaggctgcacgtatccgagggttgtaccttgagactata
ctaaggcaagatatttctttctttgatgtggagacatctactggagaaattattgaaagg
atgtctagtgacacagtgttgatccaagaagcaagtggagaaaaggttgggaagtttctc
cagctgatatcaacatttctaggtggattcataatcgcatttgcaagaggctggcttctg
tcccttgtcatgttgtcaagtatccctctagttgttatttctgcaggagccatgtcactt
gtcatatcaaagctctcaaatcgttctcagatggcctatgctgaagctgggaaagtggtt
gaacagacaatcggatcaatcagaactgtggtatctttcaatggtgagaagagagcaatg
gatagatacaatgagtttttaaaaacatcgtacaggtcaacagttcagcagggaattgct
atgggactaggaattggttcccttttgcttattgttttctgcagctacgcgttggctgta
tggtatggtgcaaggctaattattgaaaaggggtacactgggggatatatcatcaatgtg
ataatggccatcatgactggtgcaatggctcttggaaattcttcttcatgcttaagtgct
tttgtatcaggacgggtcgcggcttacaagatgtttgaaacaatctaccgaacacctgaa
attgttgcgcatgataagagtggccttgtattggagaacttcatgggtaatgttgagctt
agagatgtccatttcagttaccctacaaggccagagcagtcaattttcagtggcttctct
atcaccattaggactggcacaacaatggcattagttggggagagtggaagtggaaagtct
actgtaattagcttggtagaaaggttctacgatccacaatcaggtgaagttctcctagat
ggtgtcaatttgaagctactaaaacttagctggataagacagaaaatagggcttgtcagc
caagagccaattcttttcacgacgacaataagggaaaacatcaggtatggaaagaaaggt
gcatctgaggaagaaatcaggagtgctactatgcttgccaatgccacaaagttcattgac
aagttaccaaatggactagatacaatggttggtgagcatggcactcagctttctggtgga
cagaaacaaagaattgcaattgcaagagcaattttgaaggaccctaagatactacttctt
gatgaagctacaagtgcacttgatgctgagtctgagcatgtagttcaggaggcacttaat
aatatcatggtgaacagaaccaccataattgtagcgcatcgcttgagcactgtgaaaaat
gctgacacaatatcagtgctacaccgtggacagcttgtggaacagggatcacctgctgag
ctgattaagaatcccaatggagcatactctcaactaatacggcttcaggaggtcaacgct
aaaagaaatggggcttatgctgacagctccaacaggacacggacagcatcttatactgca
aataactatatcagtgaccagagtagcagaaagcaatccattgagagatccatgagtata
aattcaccaccggatggaagcagaaggaattcaaacacattctcagcaaatgaacatgag
aaaattggtgacgatgatgcgaaattggggaagaaagtcctcagacgactactccacctc
cacaagcccgaaactaaaattcttgtattaggatgcactgcagctgccgccaatggtgct
atacttcctgtgtttggcctcatgatttcaactgccatcagaacattttacgaaccgcca
cacaaactacaaaaagattcagtgttctgggcagagatgtatgtgacactgggtgtgctc
tccatccttatcatgccggttcaattctctatgttctacatggcaggtggaaagcttatt
gagcgcatacgtgcattatcatttactcaggttgtttaccaggaaataggatggtttgat
gaccctctgaatagcagcggtgcaataggctctaggctatccacagatgcagcatctatc
agaggcattgcaggagatgtcctttcattgatagtgcaaaacataagcacagctattgtt
ggcatcgtgatagcaatggttgcaaactggaagctagcatgcatagttgtatgctttgtt
ccatgtgtatttgcacaaagctttgctcaagcaaggttcatgaggggttttagtgctgat
gccaagaaaagttatgaacaagcaagcacgattgctagtgatgccattggtaatatcaga
actgtggcttccttctgtattgaagagaggatagtcgaaaactaccgaaagaaatgtgaa
ggtccagtgaagcaaggacttcgacaaggggttataagtggtgccggctatggattctcg
tttgctatgctgttctgcttttatgctatatctttttatgttggagctctctttatacac
aatgggacagcagacgttgggcaagtcttcaaggtcttctttgccctaaccatgatggct
gtaggggtttcgcagtcgagttccatggctcgtgattttagcaaagtggaagatgcagcg
gtttccatttttgagcttattgatcggaaatccatgattgatgcaagctctgaagaggga
acgacacttgatacagtgcagggttatatagagttgcagcacgttaccttcaagtaccca
gctcggaatgacgtgcagatcttcagagacttgtgcttgagaatcccgtctggcaagact
gttgcgcttgtcggagaaagcggaagtgggaaatcgacagtgatctcgctggtagagagg
ttctatgaccctgactctggcgtgatccttctagacggcaagaatctgaagagcctcaag
ctcagctggctgaggcagcagctggggctagttgggcaagaacccgtcctcttcaacgac
acgattagggcgaacatcgcttacggcaaggagggggaggtctccgaggaggagatcttc
gccgcagcggaggcggccaacgctcacaggtttatctcctccctctccagcggttacggc
accagcgtcggcgagcgcggcgtgcagctctctggcgggcagaagcagcggattgccatc
gcgagggcgatcctgagggaccccaaggtgctgcttctggatgaggcgaccagcgcgctg
gatgccgagtcggagcataccgtgcaggaggcgctggacagggtgatggtgggcaggacg
accgtggttgtggcgcaccggctgtcaaccataaccggagcggacaagatcgccgtcatc
aagaatggcgtcgtcgctgaggagggccggcacgagcagctgctgcgtgctttccccggt
ggggcgtatgcgtctcttgttgcgctgcagtctagcagaagttcgtga
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