Panicum virgatum (switchgrass): 120702828
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Entry
120702828 CDS
T07260
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE-like
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120702828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120702828
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120702828
Chromatin remodeling factors
NuRD complex
120702828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
Helicase_C
Chromo
DUF1087
ResIII
HDA2-3
CHDCT2
PHD
DEAD
MIEAP
C1_1
zf-ANAPC11
C1_2
Motif
Other DBs
NCBI-GeneID:
120702828
NCBI-ProteinID:
XP_039842724
LinkDB
All DBs
Position
4K:complement(6602745..6618029)
Genome browser
AA seq
1310 aa
AA seq
DB search
MSSLVERLRVRSERRPLYTLDESDDDLPPRGGAGKGKDRQDDAPAERIEREDAKEEACQR
CGKSDNLVSCSTCTYAFHRKCLVPCLNVASDKWSCPECVSPLTEMEKILDCEMRDAPRED
TSSSEPEPKKIKQYLIKWKGLSHIHCSWVSEKEYLEAAKIHPRLKTRLNNFRKQMDSVEK
SADDFIAIRPEWTTVDRILSSRKSSTGEREYYVKWKELTYEECTWENESDISAFQPQIER
FNDIQSRRKKSGGKSATREPRHFLESPTFLSGGTLHPYQLEGLNFLRYSWYHNKRVILGD
EMGLGKTIQSIAFLASLFEDKWGPHLVVAPLSTLRNWEREFATWAPQMNVVMYFGAAASR
EIIKKYEFYYPKEKPKKLKKKKSSPSNEEKKQSRIKFDVLLTSYEMINMDSAFLKNIEWE
CLVVDEGHRLKNKDSKLFGQLKEYNTRHRVLLTGTPVQNNLDELFMLMHFLEGESFGSIA
ELQEEFKDINQDKQIEKLHGMLKPHLLRRFKKDVMKELPPKKELILRVELTSKQKEYYKA
ILTKNYEVLARRNGGQISLINVVMELRKLCCHGFMIDEPDSEPANPEEGLRRLLDSSGKM
QLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLSYRKWSYERIDGKIGGAERQIRIDRF
NAKTSTRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTSKVMIY
RLVSRGTIEERMMQLTKKKMILEHLIVGRLTKANNVNQEELDDIIRYGSKELFEDENDES
RQIHYDDAAIEKLLDRKQVDDEESVEDDEDDEFLKGFKVANFEYIDEAKALAEKEEARRK
AAAEAANSERANYWDELLKDRYDVQKVEEHTAMGKGKRSRKQMAAADEDDIHDLSSEDED
YSFEDDVSDNDTNLQGNVSGRRGQYSKRKSRNVDSIPLMEGEGRTLRILGFNHAQRSLFL
QTLNRYGFQNYDWKEYLPRLKGKSVEEIQRYAELVMAHLVEDINDSDYFSDGVPKEGMRV
DDVLVRIANISLIEEKVAAMGQGKNTNLFPNYLLYEFQGLSGGRIWKTEHDLLLLKGILK
HGYARWQYISDDRDNGLFETARRELNLPSINEIIGAQLNNVENGNLEGAQEGQVNAAGAH
YKEIQRKIVEFLRKRYHILERCLDLEYAVIKSNTPVPDDIAEQGIPAGHAPAVRDINELL
VELQELQNLEPISTNEVTPDGTGGQSQVPHLYNKMCGVLEDSGASALNSFFGVKSASSSL
ANSLHQFETLCEGVVEALQPQQNGTASAIKEEALDATSNKSCRTFARSRP
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtctcgtggagcggctgcgcgtgcggtcggagaggcggccgctgtacacgctt
gacgagtccgacgacgacctcccgccgcggggcggggccgggaaggggaaggatcggcag
gacgacgcacctgccgaacggatcgagcgcgaggatgcgaaagaagaagcttgccagcga
tgcggaaaaagtgataaccttgtctcttgttcaacatgcacgtatgcatttcacaggaaa
tgcttggttccttgcttaaacgttgcatctgataaatggagctgcccggaatgtgtaagt
ccattgacagagatggagaagattctagattgtgaaatgcgggatgcgcctcgtgaagat
accagttcctcagagcctgaaccaaagaagatcaagcaataccttataaagtggaaagga
ttatcacacattcactgctcttgggtttcggaaaaagaatatttagaagctgccaagata
caccctcggttgaaaaccagattgaataacttccgtaagcaaatggattccgtggagaaa
tctgctgatgactttattgcaattagaccggagtggacaactgttgacaggatcctttct
agcagaaaaagctccactggcgagcgggagtactatgtgaaatggaaggaacttacatac
gaggaatgtacttgggaaaatgagtctgacatctcggcattccaacctcagatcgaacgc
tttaatgacatccagtccaggcgtaagaaatctggtggcaagagtgccactcgcgagcca
cgccatttcttggagagccctacgtttctttctggtggcacactacatccttatcagctt
gaagggttaaacttcttacgctattcatggtatcataacaaacgagtaatccttggtgat
gagatgggtctcgggaaaacgatacaaagtattgcttttctggcctccctatttgaagac
aagtggggtcctcatctggttgttgcccccctctcaaccctacgaaattgggagcgtgaa
tttgcaacttgggcacctcaaatgaatgttgtaatgtattttggagctgctgcttctcgg
gaaatcattaagaagtatgagttttactaccccaaagagaaaccaaagaagcttaagaaa
aagaaatcatctccatctaatgaagaaaagaagcagtcaaggataaagtttgatgtctta
ttgacatcttatgagatgatcaacatggactcggcttttctaaaaaacatagaatgggaa
tgcttggttgtggatgaggggcatcggttgaaaaacaaagattccaagctgtttggtcaa
cttaaagaatataacaccagacatcgtgtgctattaacagggaccccggttcagaataac
cttgatgagcttttcatgcttatgcacttccttgagggcgaaagttttgggagtatagct
gagctccaagaagaattcaaggatataaaccaagacaagcaaattgagaagcttcacgga
atgttgaagccacatcttcttcgaagattcaagaaagatgttatgaaagagcttcctcca
aaaaaggaattgattttacgagttgaactgacgagcaaacaaaaggagtactataaggcg
attctcaccaagaattatgaagtgttagcccgtcgtaacggtggacaaatctccttaata
aacgttgtaatggagctgcgtaaactctgttgccatggattcatgattgatgaacctgat
tctgaacctgccaatccagaagaaggtctaaggaggcttttagattcgtcaggtaagatg
cagcttctggacaagatgatggtgaaactgaaagagcagggccatagagttctaatttat
tcacagttccagcatatgttggacttactggaggattatttaagttacaggaaatggagc
tatgagcgtattgatggcaagataggtggtgctgaaaggcagatacgaatagaccgcttc
aatgctaagacgtcaactaggttttgctttcttctttctaccagagctggtggtctggga
ataaatttggcaactgcagatactgtaattatctacgacagcgattggaatcctcacgcg
gatttacaagctatggcgcgagctcatcgcttaggacagactagcaaggtcatgatatat
aggcttgttagccgaggtacaattgaggagcgaatgatgcagcttacaaagaaaaagatg
atattggagcacttaattgttggtcgactcacaaaagctaataatgtcaatcaggaggag
ctagatgatattatacgctatggatcaaaggagctttttgaggatgagaatgatgaatct
cgccaaattcattatgatgacgctgcaattgagaagttgttagatcgtaagcaagttgat
gatgaagaatctgtggaagatgatgaagacgatgaattcttaaaaggattcaaggttgcg
aactttgaatatattgatgaggcgaaggctctggcagaaaaggaggaggcacggagaaag
gctgcagctgaagctgcaaactctgaaagagcaaactattgggatgaactattgaaggat
agatacgatgtacagaaagttgaagaacataccgctatgggaaaagggaaaagaagccgc
aaacagatggctgctgctgatgaggacgacattcatgacttaagctctgaggatgaggat
tactcatttgaggatgatgtgtcagataatgacacgaatttgcaaggaaatgtttctggg
aggaggggccaatattctaagagaaaatcacgtaatgttgattcgattccattgatggag
ggcgaaggacgtaccttgagaattcttggattcaaccatgctcaacgttcattgttccta
cagacacttaatagatacggttttcagaactatgactggaaagagtatcttcctcgtctg
aaaggaaaaagtgtcgaggaaattcagagatatgctgaacttgtcatggcccatcttgtt
gaagacattaacgattcagattatttttcagatggcgtgccaaaggaagggatgcgtgtt
gatgatgtgttggtcaggatagcaaacatatcccttattgaggagaaggtggctgccatg
gggcaaggaaaaaatacaaacctctttcctaattacttgctctatgagttccaaggctta
tctggtggaagaatatggaaaacggaacatgatttactgttactgaaagggatactaaag
catggatacgcgaggtggcagtacatatcagatgacagggataatgggctttttgagact
gcgcgacgagagctgaatctcccttccattaatgaaataataggtgctcagttaaacaat
gtggaaaatggaaatctggaaggcgcacaggaaggtcaggtgaatgcagcaggtgcccat
tacaaggagatccagagaaagatagttgagttcttgagaaagagataccatattctggag
agatgcttggatctggaatatgctgtgataaagtcaaatactcctgttcctgatgatatt
gccgaacaaggtattccagctggacatgctccagctgttcgagatatcaatgaattattg
gtggaattgcaagaactgcaaaatcttgagccaatttctaccaatgaagtgactcctgat
ggcactggcggtcagtcacaagttccccatctttataataagatgtgtggcgtgcttgaa
gacagcggtgcttctgcgctcaattcgttctttggtgtcaagtccgcgtcttccagtttg
gcgaatagccttcatcagtttgaaactttgtgcgagggtgtcgttgaggccctgcaaccc
caacagaatggcacagccagtgccatcaaagaggaagcgttagatgcgacctctaataaa
agctgccgcaccttcgcaagatccaggccctga
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