Panicum virgatum (switchgrass): 120704102
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Entry
120704102 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120704102
KO
K01246
DNA-3-methyladenine glycosylase I [EC:
3.2.2.20
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120704102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120704102
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.20 DNA-3-methyladenine glycosylase I
120704102
DNA repair and recombination proteins [BR:
pvir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
120704102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adenine_glyco
Glyco_transf_15
Motif
Other DBs
NCBI-GeneID:
120704102
NCBI-ProteinID:
XP_039844290
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Position
4K:complement(41410427..41415754)
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AA seq
418 aa
AA seq
DB search
MASMAGAPRVRSLNIAAPEVEARPVLVPGGNKARSGPANARKPSPKPLRKAEPAAAGTPE
KPAATAVKEEEGAKRNAVGGGGAGAPKGASPVPSPRRTPPGPPPRRNDAPPLQPSLPLSA
PCSSDASAESVRARAFAGKVEKGRSWTKAVPKQGKAVGKVAENKSAAVDFVAPVTPEAGE
GKRRCAWATPTTDPCYVTFHDEEWGVPVHNDRRLFELLVLSCALAELTWPEILKRRQLFR
DIFMDFDPAAVSKINEKKLVAPGSVAHSLLSEQKLRAVLEIARQIIKIVDEFGSFDQYCW
GFLNHKPIVSKFRYQRQVPVKSPKADIISKDMMRRGFRSVGPTVIYSFMQAAGLTNDHLV
SCFRFEECNATPTLCTIGIDRVNMKADLKKDEMATKIRCEEIATNAEMPRTIDALIVS
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggcttccatggccggggcgccgagggtccggtccctcaacatcgcggcgccggaggtg
gaggcgaggccggtgctggtgccggggggcaacaaggccaggtcgggcccggcgaacgcc
cggaaaccgtcgccgaagccgctgcggaaggcggagccggcggcggcggggacgccggag
aagccggcggccaccgcggtcaaggaggaggagggcgccaagaggaatgccgtcggtggg
ggcggagctggcgcgcccaagggtgcgtcccctgtgccttcgccgcggcgcacgccgccg
gggccgccgccgaggaggaacgacgcgccgccgctgcagccgagcttaccgctcagcgcg
ccttgctcctcggacgcctccgcggagtcggtccgcgcccgggctttcgctgggaaggtg
gagaagggccggtcttggacgaaggctgtgcccaagcaagggaaggctgtgggtaaggtg
gcggagaacaagtcggccgctgtggattttgttgctccggtgacgccagaggctggggaa
gggaagaggaggtgcgcttgggcgactccaaccaccgatccttgctatgtcacttttcat
gatgaggaatggggggttcccgtacacaatgacaggagattgtttgagctacttgtacta
tcttgtgcattggctgagcttacatggcctgaaattctcaagaggagacaactttttagg
gacattttcatggattttgaccctgctgctgtctctaaaataaatgagaagaagcttgtg
gcacctggcagtgttgctcattctcttttgtcagagcaaaagctccgagctgtccttgag
attgctcgccagataataaagattgttgatgaatttggatcctttgatcaatactgctgg
ggttttctaaaccacaagcctatagtaagcaagtttcgctatcaaaggcaagttcctgtg
aagagtcccaaggcggatataatcagcaaagacatgatgcgaaggggattccgtagtgtg
ggcccaacggtcatatattccttcatgcaggctgcagggctaacaaatgatcacctggtc
agttgcttccggtttgaagaatgcaatgccactccaactctttgcacaattggcatcgac
agggtaaacatgaaggcagatctgaaaaaagatgagatggcaacgaagattcgttgtgag
gagattgccactaatgcagagatgccaaggacgatcgatgcacttatcgtttcatag
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