Panicum virgatum (switchgrass): 120705628
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Entry
120705628 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120705628
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120705628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120705628
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120705628
04121 Ubiquitin system [BR:
pvir04121
]
120705628
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120705628
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120705628
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120705628
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120705628
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120705628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-RING_2
Baculo_IE-1
SET_assoc
Motif
Other DBs
NCBI-GeneID:
120705628
NCBI-ProteinID:
XP_039846009
LinkDB
All DBs
Position
5K:2420164..2427480
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AA seq
852 aa
AA seq
DB search
MSATTNDRCPLCLEMMDLTDKQLKPCKCGYEICLWCWHRIMNMDQKDESGGRCPGCRSVY
NKDRILETSARNQILKELCTDKANYQKEQTKSHKQTSAKSQLGQSEPKDPNNVRVIQRKL
VYIVGMPNEFASEKLLRQKNFLGQYGKIENIIIDNIGANQQIPDSGRVYVTFAREEEAVR
CIHAVNGYVLDGKPLKATFGVTRYCHIWLSNRVCYKPNCSYVHYKASAEDTCTKDDVSVV
CARLQHLMGMDTKGPQHRSGRTLPPPGDCSSRTTTCSEISKDICINAEGLLPNGANKNAS
LLPATTPRDSSLSSGSPSSANALHRRDDHESIRSNQQNLSDPKPKKYVPPGGRNSLSTTS
VQHMQHSWRPIEGTSVPQGSKVHLNEQLDSNSDKSEASSQLGNDTSNSKQMTSAENGTSD
TSQQKPQYSNVVSQGQVVSSRRFTILGRPKATGEVGTGTSSSTKLSVVKDEHSGCITSSR
SHLVTQSLEQPSQQASATVKSHAGAEKKNGCPDIIEKLVPGNHKQLSECTASHRSTVVQS
MSSRPVPSNLSTSDAKSQATAGSNDLSDLKRKLASQNQLKLVNQDAPVSNTVIARASICR
STRNNHVNLTDGTRQDSAQGGHESFYNREMVRSGDIVPSHCSDSTMLSRPTSAVSSTDTA
APDRKERKRQACPPGFEKSHHSSDSGKSSVYVSSPACSGICPASDALVKDSCGITDQQDL
PSWATDCLKDDGDVTKNLNVSTSSRLGSTDINQRHGQLQGTFFSGWLNHPRLSPYPPHHK
LQYSGTTGSYMSTGGYDAFCQGTKSVMGGGMAGTLLQQPTMSTPRDSCTNGNADSGMNGP
KIDISYPMYTLF
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccaccactaatgacagatgtccactttgcttggagatgatggatttgacagat
aaacaactgaagccatgtaaatgtggatatgagatatgtctgtggtgttggcatcgaata
atgaatatggaccagaaagatgaatctggtgggaggtgccctggatgccgttctgtctat
aacaaggataggatcctggagacaagcgccaggaaccaaattttaaaggaactttgtact
gataaggcaaattatcaaaaagaacaaaccaagtctcataagcaaacgtctgcaaaaagt
cagttgggacagtcagaaccaaaagatccaaataatgtccgtgtgattcagcggaagctt
gtttatattgttggtatgccgaatgagttcgccagcgagaagttgctgagacagaagaat
ttccttggacagtatgggaaaatagaaaacattatcatcgataacattggagctaaccaa
cagattcctgactctggccgtgtatatgttacgtttgcaagagaagaggaggctgtccga
tgcatacatgcggttaatggctacgtcttggatggaaaacctttaaaagcaacttttggt
gtcacaagatattgccatatatggctaagcaatagggtttgctataagccaaactgttcg
tatgtgcattataaagcctcagcagaagatacttgtaccaaagatgatgtttctgtggtg
tgtgcaaggctgcaacatttgatgggaatggataccaagggtccccaacatcgctcagga
cgaactttacccccaccaggtgactgcagttcaagaactacaacttgtagtgaaatctcc
aaagacatttgcatcaatgctgaaggattactacccaatggtgctaacaagaatgctagt
ttactaccagccaccactccacgggactcgagcctttcttctggcagtccatcaagtgca
aatgcgcttcatcgaagagatgaccatgagagcattcgcagtaatcagcaaaatttgtct
gaccccaaacctaaaaaatatgtaccacctggagggcgtaacagtttaagtacgacatca
gtacagcatatgcagcattcatggagacctattgagggcacttcagttccacaaggatca
aaggtgcaccttaatgagcagttggactccaatagcgataaatctgaagcatcttcacag
ttaggaaatgacacttcaaattccaagcaaatgacctcagcagaaaatggaacatctgac
acttcgcagcaaaaaccacagtattctaatgtagtttcacaaggacaagttgtatcaagt
cggcgttttactatacttggcaggcctaaagcaacaggagaagttggtactggcacttca
agttctacaaaactttctgtggtaaaagatgagcatagcggttgcattacaagttctaga
agtcatttagttacccagagcctagagcaaccttcacagcaggcttcagctactgttaaa
tctcatgctggagcagagaaaaagaatggatgcccagatatcattgaaaagcttgtccca
ggaaatcataagcagctttcagagtgcacggcatcacacagatcaaccgtagtgcagagt
atgagtagcagacctgtgcccagcaatctttctacatctgatgccaaatctcaagctaca
gctgggtccaatgatctttcagatttgaagcgcaagttggcatcacaaaatcaattgaag
ctggtaaatcaagatgcacctgtttctaatactgttatagcaagagcaagtatctgccgg
agcactcgtaataatcatgtaaatttgactgatggtacacgacaagattcagcacaagga
ggccatgaaagcttctacaacagggaaatggttcgatcaggtgatatagttccatctcat
tgttcagatagcactatgttatcaagaccaaccagtgcagtatcatccactgatacagca
gcaccagataggaaagaaagaaagagacaggcttgtcctcctggatttgagaagtctcat
cactcttctgattcaggcaaatcatctgtatatgtgagctcccctgcttgctctgggata
tgccccgcatctgatgccctggtaaaggattcgtgtggtattacagatcaacaagacctc
cctagctgggctacagattgcctgaaagatgatggagatgtcacaaaaaatctaaatgtg
agcacctcttcacgactcggttcaactgatataaaccagagacacgggcagcttcaaggt
accttcttctctggttggttgaatcaccctcgcttgtcgccttatcctccacatcataag
cttcagtattcgggaaccaccggtagctacatgtccactggggggtatgatgcattttgc
caggggacaaaatcagtcatgggaggtggtatggcgggcacattgctccagcagccaaca
atgtcgacccctcgtgatagctgcactaatggaaacgcagattctggaatgaatggccca
aagatcgacatctcttaccccatgtacaccctgttctag
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