Panicum virgatum (switchgrass): 120707473
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Entry
120707473 CDS
T07260
Name
(RefSeq) neutral ceramidase
KO
K12349
neutral ceramidase [EC:
3.5.1.23
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00600
Sphingolipid metabolism
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
120707473
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.23 ceramidase
120707473
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Motif
Pfam:
Ceramidase_alk
Ceramidse_alk_C
Motif
Other DBs
NCBI-GeneID:
120707473
NCBI-ProteinID:
XP_039848313
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Position
5K:complement(40065524..40071725)
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AA seq
784 aa
AA seq
DB search
MEPSCLRYHVSGFGSRMIWLCFLLVLVLQSCSPALSDSPYLVGMGSYDITGPAADVNMMG
YANAEQIASGIHFRLKARAFIVAEPNGKRVVFVNLDACMASQLVTIKVLERLKARYGDLY
NENNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDVIVNGIEQCIVEAHNNLHPGKI
YVNKGDLLDAGVNRSPSAYLNNPAEERSKYQYNVDKEMTLIKFVDDELGPVGSFNWFATH
GTSMSRTNSLISGDNKGAAARFMEDWAEQNGMPKQGAHVTKDGLEYLHKISGLPRRVSSI
IPEPNEITDDLVQLASSYEASGGRRLSGSSITRRIRSSQQNKPKFVSAFCQSNCGDVSPN
VLGTFCIDTGLPCDFNHSTCNGKNELCYGRGPGYPDEFESTRIIGNRQFLKALDLFNSAS
EEIQGRVDYRHTYLDFSQLEVNVPSSTGGEQVVKTCPAAMGFAFAAGTTDGPGAFDFEQG
DVKGNPFWRLVRNLLKTPGKEQVECQAPKPILLDTGEMKEPYDWAPSILPIQIIRIGQMV
ILCVPGEFTTMAGRRLRDAVKEVLTSDSSGEFNDIHVVLAGLTNTYSQYITTFEEYQIQR
YEGASTLYGPHTLSAYIQEFQKLATAMVANKEVPTNFQPPDMLDKQIGLLPGVMFDSTPP
GVKFGDVSSDVPASSTFGKGSTVNATFYSACPRNDLLTDGTFALVEKLDGSNNWVPAYDD
DDWSLRFKWSRPAKLSPRSFATLEWTIPEDAPSGVYRLRHFGASKPLLGSIKHFTGTSRA
FAVR
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggagccatcttgcttgcgataccatgtcagtggttttggttctcgcatgatatggcta
tgctttttgctagtactcgttcttcagagttgcagcccggcactttcagattcaccatat
ttggttggtatgggaagctacgacataactggtcctgctgcagacgttaacatgatggga
tatgcaaatgctgaacagatcgcatcaggaattcatttcaggctaaaggctcgtgcattc
attgttgctgagcctaatgggaagcgtgttgtgtttgtgaatctggatgcttgcatggca
tcgcagcttgttactataaaggtgcttgaaaggcttaaggcaaggtatggagatctttat
aatgagaacaatgtggctatcagtggaatccatacacatgcggggcctggtggttatctg
caatatgtagtttatattgtcacatctcttgggtttgttcgccaatcatttgatgtaatt
gtcaatggcattgagcagtgtattgttgaagctcacaacaacctccaccctgggaaaatc
tatgtgaataaaggtgacctccttgatgctggtgtgaatcgcagcccaagtgcatatcta
aataaccctgctgaggagagaagcaagtatcagtataatgttgacaaagaaatgaccctt
atcaagtttgtagatgatgaactgggtccagttgggagtttcaattggtttgcaacgcat
ggaacatcaatgagtcgtacaaattcattgataagtggtgataacaaaggagcagctgca
cgttttatggaagattgggcagaacaaaatggtatgccaaagcagggggctcatgtaact
aaagatggtttagaatatttacacaagatatctggacttccgagaagagtttcttcaata
attcctgaaccaaatgagataactgatgacttagtacagttggcatcatcctatgaggcc
tcaggtggcaggcgattatcaggttcaagtatcaccaggcgcattagaagcagtcaacaa
aacaaacctaaatttgtttctgcattctgccagtcaaactgtggagatgttagtccaaat
gtcctgggaacattttgtatagacactggtcttccctgtgacttcaatcatagtacatgt
aatgggaagaatgaactatgctacggacgaggcccaggatatcctgatgaatttgaaagt
acccgtatcattggcaataggcaatttctcaaggctttagatctttttaattcagcttct
gaagaaatacaaggcagagttgactataggcatacttacctagatttctcgcaacttgaa
gttaatgttccttcaagtacaggaggagagcaggtggtgaaaacatgtcctgcagccatg
gggtttgcctttgctgctggaaccacagatggccctggagcttttgattttgaacaagga
gatgtcaagggaaaccctttctggaggttagtaagaaacttacttaagacgccagggaag
gagcaagttgaatgccaagctccaaaaccaatattgctagacaccggcgaaatgaaggaa
ccatatgactgggcaccttcgatacttccaattcagatcataagaatcggacagatggtt
atcttgtgtgtccctggagaattcacaacgatggctggcaggcggctaagagatgctgtc
aaagaagtactaacaagtgatagtagtggtgaatttaatgatattcatgttgttcttgct
gggctaacaaatacctattctcaatatatcacaacttttgaagaatatcagatccaaaga
tatgagggagcatcgacattgtatggccctcacaccttgagtgcctacatccaggagttt
cagaaacttgctacagccatggttgcaaacaaagaggtcccaacaaatttccaacctcca
gatatgttggacaagcaaattggactgctcccaggcgtcatgtttgattcgacacctcct
ggtgtgaagtttggagatgtcagctctgatgttcctgcaagctcaaccttcgggaagggc
agtacagtgaatgctacattctattcagcctgcccaaggaatgaccttctcactgacggt
acatttgcgcttgttgagaagctagatggtagcaacaattgggttcctgcctatgacgat
gatgactggtcgctgcgtttcaagtggtcaaggcctgcaaaacttagtccaaggagtttc
gccacgctggaatggacaattcctgaagatgccccatctggtgtttacagattgaggcat
tttggtgcctccaagccgttgttggggtcgatcaaacattttacagggacctctcgcgca
ttcgcagtgcgttag
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