Panicum virgatum (switchgrass): 120707743
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Entry
120707743 CDS
T07260
Name
(RefSeq) ABC transporter B family member 9-like isoform X1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120707743
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120707743
04147 Exosome [BR:
pvir04147
]
120707743
04090 CD molecules [BR:
pvir04090
]
120707743
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120707743
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120707743
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120707743
CD molecules [BR:
pvir04090
]
Proteins
120707743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
AAA_29
AAA_16
AAA_21
RsgA_GTPase
Zeta_toxin
AAA_15
AAA_30
DUF87
AAA_24
APS_kinase
YobI-ATPase
DLIC
Motif
Other DBs
NCBI-GeneID:
120707743
NCBI-ProteinID:
XP_039848675
LinkDB
All DBs
Position
5K:complement(45228435..45235387)
Genome browser
AA seq
1272 aa
AA seq
DB search
MDAAAAPGGRDGEEKKEGAEKKGSGGGDAGVKRVSFTGLFRYADGTDVLLMLLGTVGALA
NGVTQPIMTVIFGQVINAFGGAVAVDDVLQRVNKAVLNFVYLGIATAIVSFLQVSCWTMT
GERQATRIRSLYLKSVLRQEIAFFDVEMTTGQIVSRMSGDTVLVQDAIGEKVGKFQQLIA
TFVGGFVIAFVKGWILSLVMLACIPPIVVAGGVVSKMLSRISSKGQTSYDDAGNVVEQTL
GNIKTVVSFNGEKQAIATYNKLIHKAYKAAVEEGITNGFGMGSVFFIFFSSYGLAIWCGG
KLILSRGYSGGDVINILFAIMIGAASLGNATPCMAAFAEGQSAAYRLFATIKRKPEIDPD
DPTGKQLEDVKGDVDLKNVYFSYPARPEQLIFDGFSLHVSSGTTMAIVGESGSGKSTVIS
LVERFYDPQAGEVLIDGINIKSLRLDWIRGKIGLVNQEPLLFMTSIKDNISYGNDDATIE
DIKRAAQLANAANFIDKLPNGYDTMVGQRGAQLSGGQKQRIAIARAIIKDPRILLLDEAT
SALDVESERIVQEALNRIMVNKTTLVVAHRLSTVWNADCISVVQQGKIVEQGPHDELIMN
SDGAYSQLIRLQESQEEEDKKLDQRMSDPRSKSRSLSLKRSISRGSLGNSSRHSLSLPFG
MPGSVELLEGNDANRGNQKEQADDSEPPKKAPMGRLAGLNKPELPILLLGALAAGVHGTL
FPMFGLMLSNAIKTFYESPHELRKHSSFWGSMCVVLGIISIVSVPVEYFLFGVAGGKLIE
RIRALSFRSIVHQEVAWFDDPKNSSGALGAKLSVDALNVRQLVGDNLALLTQVTSTLITG
FVIAFVADWKLTLIILCAMPLSGAQGYAQVKFLKGFSQDAKMLYEDANQVATDAISSIRT
VASFCAKKRVMTIYDHKCEASKNQGVRTGMVGGLGFGFSYMMMYLTYGLCFYVGGQFIRH
NKSSFGDIFKVFFALMMATIGISQTSALASDSTKAMDSSISIFALLDRKSKIDSSSDEGL
TLDEVMGDIDFQHVSFKYPSRPDVQIFSDFTLRVPSGKTVALVGESGSGKSTVISLLERF
YNPDSGTISLDGVEIKSLKVNWLRDQMGLVGQEPVLFNDTIRANIAYGKHGEIIEEELIK
VAKAANAHEFISSLPQGYDTTVGERGVQLSGGQKQRVAIARAILKDPRILLLDEATSALD
TESERIVQDALDNAVIGRTTIIVAHRLSTIKSADIIAVLKDGVIVEKGRHDTLMNIEDGF
YASLVELRSASS
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgcggcagctccgggaggcagggatggcgaggagaagaaggaaggagcagag
aagaaggggagcggcggcggcgacgccggcgtcaagagggtgtcgttcacggggctgttc
cggtacgccgacggcacggacgtcctgctgatgctcctcggcacggtgggggcgctggcc
aacggcgtcacgcagcccatcatgacggtcatcttcggccaggtcatcaacgccttcggt
ggcgccgtcgccgtggacgacgtcctccaacgcgtcaacaaggcagttctgaattttgtc
tacctgggcattgcaacagctattgtttcctttctccaggtgtcatgctggacaatgaca
ggagaaagacaggcaacacgcattcgatctctgtacctcaaatctgtcttgaggcaagaa
atagcattctttgatgtagaaatgacaactgggcaaattgtttcaaggatgtctggcgat
accgtgttggttcaggatgccattggtgagaaggtcggcaagttccaacaacttattgct
acctttgtaggtggctttgtaatagcattcgtaaaaggatggattttatctcttgtcatg
ttagcttgcatacctcccattgtcgttgctggaggagttgtctcaaaaatgctctctaga
atctctagcaaggggcaaacatcatacgacgatgcagggaatgtagttgaacagacgctt
gggaacattaaaacagtggtctccttcaatggtgagaagcaggctattgcaacctacaat
aaactcatacacaaggcatataaggcagctgttgaggaaggaattacaaatggttttggc
atgggttctgttttctttatatttttctcaagctatggattagccatatggtgcggcggc
aagttgattcttagcagaggttactctggaggagacgtcatcaacattttgtttgctata
atgattggggcagcgtctttaggtaatgcaacaccctgcatggcagcctttgcagaagga
caatctgcagcatacagattgttcgcaacaatcaagaggaaaccagaaattgaccctgat
gacccaactggtaagcagttagaagacgtcaagggtgatgttgacctaaagaacgtgtac
ttcagctacccagcaagaccagagcaactaatatttgatggattctcattacatgtgtct
agcggcactacaatggctatagttggggagagtggaagtggcaaatcaactgtgataagt
cttgtagagagattctatgatccacaggctggtgaggttttaattgatgggattaacatt
aagagtttgcgacttgattggataagagggaagatcggtcttgttaaccaagagccattg
ctctttatgacatctatcaaagataatatatcatatggcaacgacgatgcaacaattgaa
gatatcaaaagagcagctcagcttgctaatgcagcaaatttcattgataaattgcccaac
ggctatgacacaatggttggccaacgtggtgctcagctctctgggggccaaaagcaaagg
atcgctattgcaagagcaataattaaagaccccagaattcttttgttagatgaggcgact
agtgcattggatgtggagtcagagcggattgtccaggaagcgcttaataggatcatggtg
aataaaacaacactagtggttgcacatcgtctgagtactgtgtggaatgctgattgcata
tcagttgttcaacaagggaaaatagtcgaacaaggtccccatgacgaattgataatgaat
tctgatggtgcttattctcaacttattcgtctgcaagaaagccaagaagaggaagataaa
aaattagatcagcgcatgtctgatccaaggtctaaaagtagaagcctctcactgaagcga
tcaataagcagaggttctttaggaaacagtagtcgccattctttgtcgctcccatttggt
atgcctggttcagttgagttgcttgaaggaaatgatgcaaacagggggaatcagaaagag
caggctgatgatagtgagccccctaagaaagctcctatgggacggctagctggtctaaac
aagccagagctaccgattcttttgttaggagcactagcagctggagttcatggaacgctt
tttccaatgttcggtctaatgctttctaatgccatcaaaactttctatgagtcacctcat
gaactaagaaagcattcaagcttttggggttcgatgtgtgttgtgttgggtattatatcg
atagtatcagtaccagtggagtatttcttatttggagtagccgggggaaagcttatcgag
cgtattcgtgccttgtcatttcggagcattgtgcaccaagaagttgcttggtttgatgat
cccaaaaactccagtggagcgcttggtgcaaagttgtcagttgacgctttgaatgtccga
caattagtgggtgataacttggccttgttgactcaggtcacctcaacactaatcactgga
tttgtcattgcttttgtggcagactggaagctcacattgatcatcctctgtgcaatgcca
ctatcgggtgctcaaggttatgcacaagtaaagttcttgaagggcttcagtcaagatgcc
aagatgttgtatgaagatgcaaatcaagtggctacggatgcaatcagtagtatcaggact
gtagcttctttttgtgctaagaaaagagtcatgacaatctatgatcataaatgtgaagct
tcaaagaatcaaggggtcagaacaggaatggttggtggccttggttttggtttctcatac
atgatgatgtaccttacatatggtctatgtttctatgttggagggcaattcatacgtcat
aacaaatctagttttggagacatttttaaggttttctttgcactgatgatggcaacaatt
ggcatatctcaaacaagtgcattggcttctgattctacaaaggcaatggattcatctatc
tccatatttgctttattggaccgaaagtcaaaaatcgattcaagcagtgatgaaggtttg
acattagatgaggtcatgggtgacatcgacttccaacatgttagcttcaagtatccaagc
cgtccggatgttcaaatcttcagtgattttaccctgcgcgttccctctggaaagactgta
gcacttgtcggagagagtggcagtggaaaatcaacagtaatttctttgctggaacgattc
tacaatcctgactctggtacaatctcattggatggggtagaaatcaagagcctaaaagtc
aattggctaagggaccaaatggggctggtgggccaagagcctgtgctcttcaacgacaca
atccgcgccaacatagcatacgggaagcatggggagatcattgaggaggagctcatcaag
gtcgcaaaagcggccaatgcgcatgagttcatatcaagccttccccaggggtatgacact
accgttggagagagaggggttcagctatccggtggccagaagcagcgagtggccattgca
cgggcaatactaaaagatcctaggattcttcttcttgatgaggcaacaagcgccttggat
actgagtctgagcgcattgtgcaagatgccttggataatgctgtgattgggaggaccaca
attattgtggcacaccgcctctcgacgatcaaaagtgcggatattattgcagttctcaag
gatggtgtgatagtggagaaaggaagacatgatacattgatgaacatcgaagatggtttc
tatgcttcactagttgaacttcgttcagcttcatcgtag
DBGET
integrated database retrieval system
