Panicum virgatum (switchgrass): 120708197
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Entry
120708197 CDS
T07260
Name
(RefSeq) ubiquitin C-terminal hydrolase 12-like isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120708197
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120708197
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120708197
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120708197
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120708197
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120708197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
UCH_1
MATH
Malt_amylase_C
SPK
Motif
Other DBs
NCBI-GeneID:
120708197
NCBI-ProteinID:
XP_039849258
LinkDB
All DBs
Position
5K:complement(50015515..50030317)
Genome browser
AA seq
1128 aa
AA seq
DB search
MVVPRAPELPQPDQDEEMLTPHQEVVEGPRQDVVEGPQQDVVEGPQPMEESASTVENQLM
PDPSTSRFTWSIENFFKRNVRKHYSDDFVVGGYKWRVLVFPRGNNTDHLSMYLDVADSHL
LPPGWSRYAQFSLAVVNQLDSKMSIRKEATHQFNARESDWGFTSFMPLMDLCDFSKGYVV
NDKCIIEAEVAVRKIFDVWNHDSKKMTGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYH
MPTTENDTPSGSIPLALQSLFYKLQHSDNSVATKELTKSFGWDSYDSFMQHDVQELNRIL
CEKLENKMKGTTVEGAIQKLFEGHHKNYIECINVDYKSTRKESFYDLALDVKGCSDVYAS
FDKYVAVERLEGDNKYQCEEHGLQDAKKGMLFIDFPPVLQLQLKRFEYDFVRDAMVKIND
RYVFPLQLDLDKDDGKYLSPEADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWY
KFDDERVTKEDMKRALEEQYGGEEELPHTNPGLNTTPLRFTKHSNAYMLVYIRESDKEKI
ICNLDEEDISEHLKVRLRKEQEEKEYKKKEKAEAHMFTALKVARDSDLKEQIGRHVHFDL
VDFDKINSYRAPKDISIKDIKVELSKEFGIPVESQIFWVWAKRQNGTYRPSRPLTWQEER
AAIGTLKDAITISKLQTSEVRLFLEFHCRQENEPIVRPLKTKEDILLFFKFYDPEKEYLR
YVGNFFVKASGKPSDIVERLNEIAGFPSDEDIELYEEIKFEPIVMCEPIDSNASFHSSQI
SDGDIICYQKRCLPDKMDQYRYPTVSSFFEYIHDKQVVRFRLLEKPKEDVFSLELSKRFT
YDDVVEKVAHQLGLDEPSKIRLTQHNPYSHQPKPHHIKYRGVNYLSDMLQHHTQMCDILY
YETLDIPLPELEGLKTLRVAFQNAANYEVSFHIMRSPKSNTLFDLIEDLKSKVELSCNHA
EFRLFEVYLHKICKVYQPGDTIDSVNDQYGPLRIEEVPEEEKNAGPQDRLVHVYHFFKDN
HHNQYFGEPFFFLIRDGEVLADIKVRIQKRLRIPDEQFLKWKFACVTYSQTEYLQDSDVV
LSRFQKQKPVYGAWEHHLGLEHTATTPKRSFLASQNRHSFEKPVKIYN
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atggttgtcccgcgcgcccccgagctgccacagccggaccaggatgaggagatgctgacc
ccgcatcaggaggtcgtcgagggtccgcggcaggatgtcgtcgagggtccgcagcaggat
gtcgtcgagggtccccagccgatggaagaatctgcatccaccgttgaaaaccaactcatg
ccagatccctctacatccagatttacatggtccattgaaaatttcttcaaacgcaatgtt
agaaagcattactctgatgattttgtcgtcggaggatacaaatggcgagtgctagtcttt
cctaggggaaataacacagatcacctttcaatgtacttggatgttgctgattcacacttg
ttgcctcctggctggagtaggtatgcacaattcagtcttgctgtggtaaaccaattagac
agcaaaatgtcgataagaaaagaagcaacacatcaattcaatgcccgagaaagtgattgg
ggttttacatcttttatgcctttgatggatctatgtgattttagtaaaggatatgttgtt
aatgataaatgcattattgaagctgaggttgctgtgcgtaaaatttttgatgtctggaac
catgactccaaaaagatgactggttatgttggcctgaagaatcaaggagctacctgttac
atgaactctcttcttcagactttgtatcacattccatactttcggaaggctgtatatcat
atgcctactacagagaatgatacaccttcagggagcataccattggctttgcaaagtctt
ttttacaaacttcagcatagcgacaatagtgttgctacgaaagagcttaccaaatctttt
ggatgggatagctatgattcattcatgcagcatgatgttcaagaattgaataggattctc
tgtgaaaagctggagaacaagatgaagggaaccaccgtggaaggagcaatacaaaaatta
tttgagggtcaccataagaattatatcgagtgtattaatgttgactacaaatctaccaga
aaagagtcattctatgatcttgcacttgatgtaaagggatgttctgatgtctatgcatca
tttgataagtatgttgcagtggagaggttagaaggcgataataagtaccaatgtgaggaa
catggtctgcaggatgccaagaaagggatgctttttattgacttccctccagtcttgcaa
cttcagttaaaacggtttgaatacgattttgtgcgggatgccatggttaagataaacgac
cgctatgtgttcccacttcaattggatcttgacaaagatgatggaaaatatctttctcca
gaagcagatagaagtgtgcgtaacctatatactcttcacagtgtactagttcatagcggt
ggagttcatggaggacactactatgccttcattcgcccgacactgtctgatcaatggtac
aagtttgatgatgaacgggtgacaaaagaagacatgaagcgggcgttagaggagcaatat
ggtggtgaagaagagctcccccataccaaccctggactgaatactacaccactgcgattt
actaagcattcaaatgcttacatgcttgtttacattcgagaaagtgataaagagaaaatt
atctgtaatttggacgaggaagacatatcagaacaccttaaggttaggttaagaaaggag
caggaagagaaggaatacaagaaaaaggagaaagctgaggctcacatgttcacagcattg
aaggtggcccgagattctgatttgaaagagcaaattggaagacatgtgcactttgatctc
gtggactttgacaaaattaatagctaccgtgcacctaaggacatctcaatcaaagacatc
aaggtggagctttcaaaagaatttggcatcccagtagaatcccaaatattttgggtgtgg
gctaagcggcagaacggcacctacaggcccagtcggccattgacctggcaggaggaaaga
gctgctattggcacgcttaaagatgcaataactatatccaaattacagacttctgaagta
aggctgttcttggagtttcattgcagacaggagaatgaaccaattgttcgtcctttgaag
actaaagaagatatattacttttcttcaagttctatgatcctgaaaaggaatacctaaga
tatgttggaaatttttttgtgaaagcatcaggaaaaccatctgatatagtagaaaggctg
aatgagattgccggatttccgtctgatgaagatattgagctctatgaggagataaagttt
gaaccaattgtgatgtgcgaaccaattgacagtaatgcttctttccattcaagccagatt
tctgatggtgatataatatgttaccaaaaacgctgtttgccagataaaatggatcaatat
cgctatcctactgtctcttctttctttgaatatattcatgataaacaggttgtccgtttc
agattgcttgagaagccaaaagaagatgtcttttctttggagctttcaaagcgtttcaca
tatgatgatgttgttgagaaggttgctcatcaacttggtctggatgaaccttctaaaatt
cggcttactcaacacaatccatattctcatcaacccaaacctcaccatatcaaatacaga
ggtgttaattatctttcggacatgctacagcatcacactcagatgtgtgacatattatat
tatgagacactggacattccattgcctgaactggaaggtctgaaaacacttagagtcgct
tttcaaaatgctgcaaactatgaggtgtcatttcacatcatgcggtcaccaaaaagtaac
actctttttgatttgattgaagacttaaagtcaaaggttgaactttcttgtaatcacgct
gaattccggcttttcgaagtctaccttcacaagatatgcaaggtgtatcagccaggagat
acgattgattcagttaatgaccaatatggaccccttcgtattgaagaggttcctgaggaa
gagaaaaatgctgggcctcaagatcgtttggttcatgtctatcacttcttcaaagataat
catcataatcaatattttggagaacctttcttctttttaattcgtgatggtgaggttttg
gcggatatcaaagtccggattcagaagaggcttagaatccctgatgagcagtttctaaag
tggaaatttgcttgtgttacatacagtcagacagaatacctccaagattcagatgttgta
ttgagccgattccagaaacagaaacctgtttatggggcgtgggaacatcatcttggattg
gagcatacagccactacgccaaaaaggtctttcttagccagtcagaaccgtcattctttt
gagaagccagtgaagatttacaactaa
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