Panicum virgatum (switchgrass): 120708360
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Entry
120708360 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120708360
KO
K01246
DNA-3-methyladenine glycosylase I [EC:
3.2.2.20
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120708360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120708360
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.20 DNA-3-methyladenine glycosylase I
120708360
DNA repair and recombination proteins [BR:
pvir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
120708360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adenine_glyco
Motif
Other DBs
NCBI-GeneID:
120708360
NCBI-ProteinID:
XP_039849508
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All DBs
Position
5K:51506386..51509104
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AA seq
378 aa
AA seq
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MCNSNVKTVGVAQIDGRPVLQPAGNRVAPPDGARPLKKSLHKSLSMPASFDNNAAAARPA
PENTTRAAPAAPLLPPATPASVTARATKAAAAAAEKSRAKGSRKPGAVLPVVTFAALEAF
EPAGSIAAAQREHAALAQAQRKLRIAHYGRTASFSRVEGRVGATAAATAAAEPAVPASPA
GLDEKRCSFITPYSDPLYVAYHDEEWGVPVHDDELLFEMLTLSGVQVGADWTSILKKRHV
YREAFSGFDVDAVAKYTEKQMASLSADFGLDLGTVRGTVNNACRILEVRRDFGSLDKYVW
AFVNNKPLSPGYKYSRKIPVKTSKSESISKDMVRRGYRFVGPTVIHSFMEAVGLTNDHLV
SCPRHRACSAAAAAGRAN
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaactccaacgtcaagaccgtgggcgtcgcccagatcgacggccgcccggtgctg
cagccggcgggcaaccgcgtggcgccgccggacggggcgcgcccgctcaagaagtccctg
cacaagtcgctctccatgccggcctccttcgacaacaatgccgccgccgcgcgccccgcg
cccgagaacaccacccgcgccgcgccggcggctccgctgctgcctcccgcgacgccggcc
tcggtcaccgcgagggcgacgaaggcggcggcggcggccgcggagaagagcagggccaag
ggcagcaggaagcccggggcggtgctgccggtggtgacgttcgcggcgctggaggcgttc
gagcccgcggggagcatcgcggcggcgcagcgggagcacgccgcgctggcgcaggcgcag
cgcaagctgcggatcgcgcactacggccgcaccgcgtccttctcccgtgtcgaggggagg
gtcggcgccaccgccgccgccacggccgccgccgagccggccgtccccgcctcccccgcc
gggctcgacgagaagcgctgcagcttcatcacgccctactcagaccccctgtatgtggcg
taccatgacgaggagtggggagtgcccgtgcacgacgacgagttgctgttcgagatgctt
accctgtccggcgtgcaagtcggggcagactggacttccatcctgaagaagagacacgtc
tacagggaggcgttctccggcttcgacgtggacgccgtcgccaagtacaccgagaagcag
atggcgtcgctgagcgccgacttcggcctggacctgggcaccgtcagagggaccgtcaac
aacgcctgccggatcctcgaggtgcggagggacttcgggtcgctggacaagtacgtgtgg
gcgttcgtgaacaacaagccgctgtcgccggggtacaagtacagccggaagatcccggtg
aagacgtccaagtcggagtccatcagcaaggacatggtccgccggggctaccgcttcgtc
ggccccaccgtcatccactccttcatggaggccgtcggcctcaccaacgaccacctcgtc
tcgtgcccgcgccaccgcgcctgctccgccgccgctgccgccggccgcgctaactga
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