Panicum virgatum (switchgrass): 120711473
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Entry
120711473 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120711473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120711473
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120711473
Spliceosome [BR:
pvir03041
]
Complex A
U2 snRNP components
U2 related factors
120711473
Complex B
120711473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Tet_JBP
SelK_SelG
Motif
Other DBs
NCBI-GeneID:
120711473
NCBI-ProteinID:
XP_039852951
LinkDB
All DBs
Position
6K:complement(6526737..6531166)
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AA seq
1065 aa
AA seq
DB search
MGSGDDERSSSKHHHRDKEKDRDRERSSSRHHRDKDRDRDRERERSSSRHHREDGDRDRD
RDRHREKDRDREERKEREREERKAREREKERAREEKEKERARRREERDREDRDRSSRRRG
DADGEDDEDRDRDRKRRRRSSHHHHHRDAEPEAASPREEEAVDDEEAERRRQRKKEEDME
AEQQRLDDEMERRRRRVKEWQEKRREQQQQEQDGGGAGGTSAAATAEADGAKEGKKWTLD
GEESDEEGDNEGGKKAEENGGSGDMDVDLPNGGGDANGGAGMEEDEIDPLDAFMNSMVLP
EVKKLESAAAAMDTAPAAGVDDKNGKNTKDAVSNGDKKGPRRAMGRIMQGDDSESDYDDA
DDEGAGEDDEDDEEFIKRVKKTKAEKLAIVDHSKIDYQPFRKNFYIEVKDITRMTSEEVV
AYRKELELNVHGKDVPKPIKTWVQSGMTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDC
IGIAKTGSGKTIAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKVL
GINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEAD
RMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKD
ITQLVEVRPDSDRFFRLLELLGEWYVKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGG
KDQTDRESTMADFKSNVCSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGR
AGRKGFAVTFISEEEERYAPDLVKALELSQQAVPEDLKALADRFMAKVKQGTEQAHGTGY
GGSGFKFNEEEDEARKTAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQAIANAHA
AAALVANKAASNANQQVSGTAAVPLIPLLAATNQQNDEATARALQAAMNLQQNLARIQAH
AVPEHYEAELEINDFPQNARWKITHKETLAPIQDWTGAAITTRGTYIPQGKIVGANERKL
YLFIEGPTESSVKKAKAELKRVLEDCANQALNLPGSAQTGKYSVI
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgggctccggcgacgacgagcgctccagctccaagcaccaccaccgcgacaaggaaaag
gaccgcgaccgcgagcgctcctcctcccgccaccaccgtgacaaggaccgggaccgggac
cgcgagcgcgagcgctcgtcctcgcggcaccaccgcgaggatggcgaccgggaccgggac
cgcgaccgccaccgggagaaggaccgggatcgcgaggagcgcaaggagcgggagcgggag
gagcgcaaggcgcgggagcgggagaaggagcgggcgcgggaggagaaggagaaggagcgg
gcgcggcggcgcgaggagagggaccgcgaggatcgggaccggtcgtccaggcggcgcggg
gacgcggacggcgaggacgacgaggaccgcgaccgcgaccgcaagcgccgccgccggtcc
tcgcatcaccaccaccaccgcgatgcggagccggaggcggcgtcgccccgggaggaggag
gcggtggacgacgaggaggcggagcggcggcggcagcggaagaaggaggaggacatggag
gccgagcagcagcggctggatgatgagatggagcgccgccgccggcgcgtcaaggagtgg
caggagaagcgccgcgagcagcagcagcaggagcaggacggtggtggcgctggcggcact
tccgccgccgcgacggctgaggctgatggcgccaaggagggtaagaagtggaccttggat
ggggaggaatctgatgaggaaggggataatgagggtggcaagaaggcagaggagaacgga
ggatctggtgacatggatgtggatttgccgaatgggggcggcgatgccaatggcggtgct
ggtatggaggaggatgagattgatccgctcgatgccttcatgaactccatggtgctgccg
gaggttaagaagctggagagtgctgctgcagcaatggatactgctcctgccgcaggtgtg
gatgataagaatggtaagaacaccaaggatgctgttagtaatggggataaaaaggggcca
aggagagcgatggggagaataatgcaaggggatgattcagagtcggattatgatgatgct
gacgatgagggggccggagaggatgatgaggatgatgaggagttcataaagcgtgtaaag
aaaacaaaggcagagaagctggcaattgttgaccattcgaagattgactaccaaccgttc
cggaagaatttctatattgaggtgaaggacattaccaggatgacatctgaggaagtggtg
gcctataggaaggagttggagctcaacgtgcatggaaaagacgtgcccaagccaataaag
acatgggtgcagagtgggatgacaagcaagctccttgacaccatcaagaagcttggtttc
gagaaaccaatgcctatccaggcacaagcgctgccgataataatgagtggtcgtgattgt
ataggaattgcaaagactggatctggcaagactatagcgttcgttcttccaatgctgagg
catgtcaaggaccagccgcctgttgttcctggagatggccctatcgggcttattatggct
cctaccagagagcttgtggtgcagatacattcagacattaagaagttctctaaggtgctt
ggcatcaactgtgttgcaatctatggaggttcaggggttgcacagcagattagcgaattg
aagaggggtgctgaaattgttgtttgtacaccgggaaggatgattgatatcctttgcact
agcagcggaaaaataaccaaccttcgccgagttaccttcttggtgatggatgaagctgat
aggatgttcgatatgggttttgagcctcagattactcggattgttcagaacactcggcca
gataggcagacagtacttttctctgccacatttccacggcaggtggagatattggcacgc
aaggtgctaactaagcctgttgaaattcaggtgggtgggagaagtgtcgtgaacaaagat
atcacacaactggttgaggtgcgaccagacagtgacaggttcttcaggctgttggagttg
cttggtgaatggtatgttaagggaaaaattcttgtttttgttcactcacaagataaatgt
gattccctactaaaagacctgttccagcatgggtatccatgtctgtctcttcatggtggt
aaagatcaaactgaccgtgaatcaactatggctgatttcaagagcaatgtctgcagctta
ctgattgctacaagtgtcgctgctaggggtttagatgtgaaagaacttgagctggttgtc
aattatgatgtccctaaccattatgaggactatgttcatcgtgttgggcgaacggggcgt
gctggtagaaaaggttttgctgtgacttttatttctgaggaagaggagcggtatgcacca
gaccttgttaaggccttggagctctctcaacaagctgttccagaagatctgaaagctcta
gcagatcggtttatggcgaaggtgaagcagggcacagagcaggcccatggtacaggttat
ggtggtagtggttttaagtttaatgaggaagaggatgaagccagaaagacggcaaagaag
gctcaggcaagggaatatggatacgaagaagacaagtctgattcagattctgatgaggaa
ggcggggtgcgtaaggcgggaggtgacctggcagcacaagctattgccaatgctcatgca
gctgctgctttggttgcaaacaaggctgcaagcaatgctaaccagcaagtatcaggaact
gcggcagtgcccttgattcctttacttgctgcaactaaccaacaaaatgatgaagccaca
gctcgtgcacttcaggctgcaatgaacttacaacaaaatctggcgaggatacaggctcat
gcagttccagaacactatgaggctgaacttgagatcaacgatttcccacagaatgctcgc
tggaagatcactcacaaagagacattggctcctattcaggactggactggtgctgctatc
actacaaggggaacatatattcctcaaggaaaaattgttggtgcaaatgagcgcaaactg
tacctgtttattgagggcccgacagagtcatctgtgaagaaggcaaaagcagaactgaaa
cgtgtccttgaggattgtgccaaccaagctctgaatcttcctggatctgctcaaactgga
aagtattctgttatttga
DBGET
integrated database retrieval system
