Panicum virgatum (switchgrass): 120712873
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Entry
120712873 CDS
T07260
Name
(RefSeq) RNA-binding protein 208
KO
K13201
nucleolysin TIA-1/TIAR
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120712873
03041 Spliceosome [BR:
pvir03041
]
120712873
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
120712873
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
120712873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_7
Nup35_RRM_2
PHM7_cyt
Motif
Other DBs
NCBI-GeneID:
120712873
NCBI-ProteinID:
XP_039854725
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All DBs
Position
6K:44144436..44149667
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AA seq
445 aa
AA seq
DB search
MNGAGGSHQQQQQRLRQQQQQQQALLMQQALQQQQQYQSGVLAAATAAAMTQMEPISNGN
LPPGFDPSTCRSVYVGNVNPNVTETLLIEVFQSAGLVERCKLIRKEKSSFGFVDYYDRRS
AALAIMTLHGRHIYGQAIKVNWAYASTQREDTSGHFHIFVGDLSSEVNDATLYACFSAYP
SCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKNNSEEK
PETDNHNAVVLTNGGSSNSATDASLDGGSKENPENNPDCTTVYVGNLGHEVNRDELHRHF
YNLGVGSIEEIRVQQEKGFGFVRYSTHGEAALAIQMANGLVVRGKPLKCSWGNKPTPPGT
ASKPLPPPVAPYQPAVAMPGVPQGFTAAELLAYQRQLALSQAAAGQIAGQHGLAGQVSAG
LLAGSQALYDGYPNQSSAQQLMYYN
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcgccgggggcagccaccagcaacagcagcagaggctccggcagcagcagcag
cagcagcaggcgctcctgatgcagcaggcactgcagcagcagcagcagtaccagtccggc
gtcctcgcggcagcgacagcggccgccatgacccagatggaacctatttccaatggcaat
cttccacctgggtttgatccttccacttgtcgcagtgtgtatgtggggaatgtgaaccca
aacgtcaccgagacccttctgattgaagttttccagagtgctggccttgtggaaagatgc
aagctcatcaggaaagagaagtcttcctttgggtttgtggattactatgatcgaagatct
gctgctctagcaataatgacccttcatggtcgtcacatatatggacaagcaatcaaggtg
aactgggcgtacgccagtacacagagggaggacacatctgggcatttccatatttttgtt
ggtgatttaagttctgaagtgaatgatgcaactctttatgcctgtttctcagcatatcct
tcttgttctgatgctcgagtcatgtgggacaacaaaactgggcgctccagaggttatggt
tttgtctccttccgtaatcaacaggaagctgaaactgctataactgaaatgactggaaaa
tggcttggaagcagacaaataaggtgcaactgggccacaaagaacaattcagaagagaaa
ccagaaactgacaatcataatgcagttgtactaacaaatggtggctcgagtaattcagca
acagatgcaagcctggatggaggaagtaaagagaacccagagaacaaccctgattgtact
actgtatatgttggcaaccttggacatgaggttaaccgagatgagcttcaccgccacttc
tataacttaggggtcgggtcaatcgaggaaattcgcgttcaacaggagaaaggatttgga
tttgtgagatatagcacccatggtgaagcagcattagctattcagatggccaatggattg
gttgtccgtgggaaacctcttaagtgctcatggggcaacaaaccaactccacccgggact
gcatccaagcccctaccccctccagttgctccataccagcctgctgttgcaatgccaggc
gtccctcaaggcttcacagcagctgagcttctggcttatcagaggcagcttgccttaagc
caggctgcagcagggcagattgcagggcagcatggtctcgcgggtcaggtatctgcgggg
cttcttgctggttcccaggccctctatgatggctacccaaaccagtcatctgcccagcag
cttatgtactacaactag
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