Panicum virgatum (switchgrass): 120713143
Help
Entry
120713143 CDS
T07260
Name
(RefSeq) ABC transporter B family member 1-like
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120713143
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120713143
04147 Exosome [BR:
pvir04147
]
120713143
04090 CD molecules [BR:
pvir04090
]
120713143
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120713143
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120713143
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120713143
CD molecules [BR:
pvir04090
]
Proteins
120713143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
AAA_16
Zeta_toxin
AAA_29
nSTAND1
RsgA_GTPase
AAA_25
SbcC_Walker_B
APS_kinase
DUF87
AAA_30
AAA_15
DUF6264
Rad17
Motif
Other DBs
NCBI-GeneID:
120713143
NCBI-ProteinID:
XP_039855083
LinkDB
All DBs
Position
6K:complement(48281925..48288610)
Genome browser
AA seq
1366 aa
AA seq
DB search
MSSAAADPEEIRARVVVLGAHHAADEWARPELEAFHLPSPSQSGLLAQQGEAAEQSQSTP
PAAAPPPPPLEIEQPSNARPSSNIDAAMMNKEKKKKQPTPPAALRDLFRFADGLDCVLML
VGTLGALVHGCSLPVFLRFFADLVDSFGSHADDPDTMVRLVVKYAFYFLVVGAAIWASSW
AEISCWMWTGERQSTQMRIRYLDAALRQDVSFFDTGVRTSDVIYAINADAVVVQDAISEK
LGNLIHYMATFVAGFVVGFTAAWQLALVTLAVVPLIAVIGGLSAAALAKLSSRSQDALSN
ASSIAEQALAQVRIVQAFVGEDRAMRAYSAALAVAQRIGYRSGFAKGIGLGGTYFTVFCC
YGLLLWYGGHLVRARRTNGGLAIATMFSVMIGGLALGQSAPSMAAFAKARVAAANIFRII
DHEPGISRDGDGGEGVELEAVTGRVEMRGVDFAYPSRPDVPILRGFSLSVPAGKTIALVG
SSGSGKSTVVSLIERFYDPTAGQILLDGHDLKSLKLRWLRQQMGLVAQEPTLFATSIKEN
LLLGRESESATQAEMEEAARVANAHSFIIKLPDGYDTQVGDRGLQLSGGQKQRIAIARAM
LKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQGGA
VSEMGTHDELMQEHTTYAKLIRMQEQAHEAALVNARRSSARPSSARNSVSSPIMTRNSSY
GRSPYSRRLSDFSTADLSIHDHHQHHQPAMAFRAGASSFLRLARMNSPEWGYALLGSLGS
MVCGSFSAIFAYVLSAVLSVYYAPDPRYMERQIARYCYLLIGMSSAALVFNTAQHVFWDA
VGENLTKRVRERMFAAVLRNEMAWFDADENASARVAARLALDAQNVRSAIGDRISIIVQN
SALLLVACTAGFVLQWRLALVLLAVFPLVVAATVLQKMFLQGFSGDLEAAHSRATQIAGE
AVANLRTVAAFNAERKITALFAANLRGPLRRCVWKGQIAGSGYGVAQFLLYASYALGLWY
AAWLVKHGAADFSRAIRVFMVLMVSANGAAETLTLAPDFVKGGRAMRSVFETIDRRTEVE
PDDADAAPVPERPRGEVELRHVDFAYPLRPEVPVLRDLSLRARAGRTLALVGPSGCGKSS
VLALVQRFYEPTSGRVLLDGRDVRKYNLRALRRAMAVVPQEPCLFAASIHDNIAYGREGA
TEAEVLEAAAQANAHSFISALPEGYRTQVGERGVQLSGGQRQRIALARALVRQAPILLLD
EATSALDAESERCVQEALERAGAGAGAGGRGTTTIVVAHRLTTVRNAHTIAVIDDGKVME
QGSHAHLLKHHPDGCYARMLQLQRLTTGAGGPSSSSLASSNGTGDC
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcgccgctgccgacccggaggagatcagggcgcgcgtcgtcgtcctcggcgcg
caccatgccgccgacgagtgggcgcgcccggagctcgaggccttccacctgccctcccca
tcccaatctggcttgctagcacagcaaggagaagcagcagagcaatcccaatccacaccc
cctgctgctgctcctcctccgcctcctctggagatcgagcagccttccaatgccaggcca
tccagtaacatcgacgccgccatgatgaacaaggagaagaagaagaagcaacccaccccg
ccggccgccctgcgcgacctcttccgcttcgccgacggcctcgactgcgtgctcatgctc
gtcggcaccctgggcgcgctcgtccacggctgctcgctccccgtgttcctccgcttcttc
gccgacctcgtcgactcgttcggctcccacgccgacgacccggacaccatggtccgcctc
gtcgtcaagtacgccttctacttcctcgtcgtcggggcagcaatctgggcatcctcatgg
gcagagatctcttgctggatgtggaccggcgagcgccagtccacccagatgcggatccgc
tacctcgacgccgccctccgccaggacgtctccttcttcgacaccggcgtccgcacctcc
gacgtcatctacgccatcaacgccgacgccgtcgtcgtgcaggacgccatcagcgagaag
ctcggcaacctcatccactacatggccaccttcgtcgccggcttcgtcgtcggcttcacc
gccgcctggcagctcgcgctcgtcacgctcgccgtcgtcccgctcatcgccgtcatcggg
ggcctcagcgccgccgcgctcgccaagctctcctcccggagccaggacgcgctctccaac
gccagcagcatcgccgagcaggcgctggcgcaggtacggatcgtgcaggccttcgtcggc
gaggaccgcgccatgcgggcctactcagcggcgctcgccgtggcgcagcggatcggctac
cgcagcggcttcgccaaggggatcggcctgggcggcacctacttcaccgtcttctgctgc
tacgggctgctgctctggtacggcggccacctggtgcgcgcccgccgcaccaacgggggc
ctcgccatcgccaccatgttctccgtcatgatcggcggcctggccctcgggcagtcggcg
ccgagcatggccgccttcgccaaggcgcgcgtggcggccgccaacatcttccgcatcatc
gaccacgagccggggatctcgcgggacggcgacggcggcgagggcgtggagctggaggcg
gtgacggggcgggtggagatgcggggcgtggacttcgcgtacccgtcgcggccggacgtg
cccatcctgcgcggcttctcgctgagcgtgccggccgggaagaccatcgcgctggtgggg
agctccggctccgggaagagcacggtggtgtcgctcatcgagaggttctacgacccaacc
gcagggcagatcttgctggacgggcatgatctcaagagcctcaagctccggtggctccgg
cagcagatgggcctggtggcgcaggagccgacgctgttcgcgacgagcatcaaggagaac
ctgctgctggggcgggagagcgagagcgccacgcaggcggagatggaggaggcggccagg
gtggccaacgcccactcattcatcatcaagctccccgacggctacgacacgcaggtcggc
gatcgcgggctgcagctctccggcggtcagaagcagcgcatcgccatcgcgcgcgccatg
ctcaagaacccggccatcctgctgctggacgaggcgaccagcgcgctggactcggagtcg
gagaagctggtgcaggaggcgctggaccgcttcatgatcgggcgcaccaccctggtgatc
gcccaccggctgtccaccatccgcaaggccgacctggtggccgtgctgcagggcggcgcc
gtctccgagatgggcacccacgacgagctcatgcaggaacacaccacctacgccaagctc
atccgcatgcaggagcaggcgcacgaggccgccctcgtcaacgcccgccggagcagcgcc
cggccctccagcgcccgcaactccgtcagctcccccatcatgacgcgcaactcctcctac
ggccgctccccctactcgcgccgcctctccgacttctccaccgccgacctgtccatccac
gaccaccaccagcatcatcagccggcgatggccttccgcgccggcgccagctccttcctc
cgcctcgccaggatgaactcgcccgagtggggctatgcgctgctcggctccctgggctcc
atggtctgcggctccttcagcgccatcttcgcctacgtgctcagcgccgtgctcagcgtc
tactacgcgccggacccgcgctacatggagcgccagatcgcccggtactgctacctcctc
atcggcatgtcgtctgcggcgctggtgttcaacacagcgcagcacgtgttctgggacgct
gtcggcgagaacctcaccaagcgcgtgcgcgagaggatgttcgccgccgtgctccgcaac
gagatggcctggttcgacgccgacgagaacgccagcgcgcgcgtcgccgcccgcctcgcg
ctcgacgcccagaacgtgcgctccgccatcggggaccgcatctccatcatcgtccagaac
tcggcgctgctgctcgtcgcctgcaccgccggcttcgtcctccagtggcgcctcgcgctg
gtgctcctggccgtcttcccgctcgtcgtcgctgccacagtactgcagaagatgttcctc
cagggcttctcgggggacctcgaggccgcgcactccagggccacgcagatcgccggcgag
gccgttgccaacctgcgcaccgtggcggccttcaacgcggagcgcaagatcacggcgctg
ttcgcggccaacctgcgcggcccgctgcggcggtgcgtgtggaaggggcagatcgccggc
agcggctacggcgtcgcgcagttcctgctctacgcgtcctatgcgctggggctctggtac
gcggcgtggctggtgaagcacggcgccgctgacttctcgcgcgccatccgcgtcttcatg
gtgctcatggtgtccgccaacggcgccgccgagacgctcacgctggccccggacttcgtc
aagggcggccgcgccatgcgctccgtgttcgagaccatcgaccggcgcacggaggtggag
cccgacgacgcggacgcggcgcccgtgccggagcggccgcgcggcgaggtggagctccgg
cacgtggacttcgcctacccgttgcggccggaggtgccggtgctccgggacctgagcctc
cgggcgcgcgccggcaggacgctggcgctggtggggccgagcgggtgcggcaagagctcc
gtgctggcgctggtgcagcgcttctacgagcccacctccgggcgcgtgctcctggacggc
agggacgtgcgcaagtacaacctgcgggcgctgcggcgcgccatggcggtggtgccgcag
gagccctgcctgttcgcggcgagcatccacgacaacatcgcctacgggcgtgagggcgcg
acggaggcggaggtgctggaggcggcggcgcaggccaacgcccacagtttcatctcggcg
ctgccggaggggtaccggacgcaggtcggggagcgcggggtgcagctgtcgggcggccag
cggcagcggatcgccctcgcgcgcgcgctggtgaggcaggcgcccatcctgctgctggac
gaggccaccagcgcgctggacgcagagtcggagcgctgcgtgcaggaggcgctggagcgc
gcgggggccggggccggggccggcggccgcggcaccaccaccatcgtcgtcgcgcaccgc
ctcacgaccgtgcgcaacgcccacaccatcgccgtcatcgacgacggcaaggtgatggag
cagggctcgcacgcgcacctgctcaagcaccacccggacggctgctacgcgcggatgctg
cagctgcagcggctcaccaccggtgctggtggaccctcgtcctcgtcgttggcatcgtcc
aacgggacaggagactgctag
DBGET
integrated database retrieval system
