Prionailurus viverrinus (fishing cat): 125149533
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Entry
125149533 CDS
T09889
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
pviv
Prionailurus viverrinus (fishing cat)
Pathway
pviv03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
125149533 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pviv03000
]
125149533 (KDM2B)
04121 Ubiquitin system [BR:
pviv04121
]
125149533 (KDM2B)
03036 Chromosome and associated proteins [BR:
pviv03036
]
125149533 (KDM2B)
Enzymes [BR:
pviv01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
125149533 (KDM2B)
Transcription factors [BR:
pviv03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
125149533 (KDM2B)
Ubiquitin system [BR:
pviv04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
125149533 (KDM2B)
Chromosome and associated proteins [BR:
pviv03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
125149533 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
125149533 (KDM2B)
BRITE hierarchy
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
Motif
Other DBs
NCBI-GeneID:
125149533
NCBI-ProteinID:
XP_047684553
LinkDB
All DBs
Position
D3:7987184..8140716
Genome browser
AA seq
1418 aa
AA seq
DB search
MRPPPATQPSKSQLCTQLPGGGGACVQGALVTQQQNSDARALTAPGASRAPSPPLTSSGS
RPRPPHPGPTAPSTSPAAGSERDRQQCLRSGDYDVDASPPTTAENGFLGLCKRICLSRPI
DRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQGDFVHAMEGKDFNYEYVQREALRVP
LIFREKDGLGIKMPDPDFTVRDVKLLVGGRRLVDVMDVNTQKGAEMSMSQFVRYYETPEA
QRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQTEATNAIAEMKYPK
VKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSD
IFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIE
DRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSYLTQEYQRESMLIDAPRKPSIDGFSSD
SWLEMEEESCEQQPQEEEKEEEEEEEEEEGADKVPKLPADGPASPTSTPSEDQEAPGKKP
KAPAMRFLQRTLSNESEESVKSTTVPTDYPKTPTGSPATGVSAKWTHLTEFELKGLKALV
EKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHADDDPSLAVTGVPVVTWPKKTPKNRA
VGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGR
MKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLK
IKESEGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLLKEQKMNRDNK
EGQEPAKRRSECEEAPRRRSDEHPKKVPPDGILRRKSDDVHLRRKRKYEKPQELSGRKRA
STLQTSPGSSSHLSPRPPLGSSLNPWWRSSLTYFQQQLKPGKEDKLFRKKRRSWKNAEDR
MALANKPLRRFKQEPEDDLPEAPPTARESDHSRSSSPTAGPSTEGAEGPEEKKKVKMRRK
RRLPTKELSKELSKELNQEIQKTENSLANENHQPIKSEPESESEEPKRPLGLCERPHRFS
KGLTGPPRELRHQLGPGLRSPPRVISRPPPSVSPPKCIQMERHVIRPPPISPPPDSLPLD
DGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHCKSITPLML
SGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSALCSSSCPLLRTL
DVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDASLRLIIRHMP
LLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFKRCGNICHI
DLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccgccgcctgcaactcagccctccaaaagtcagctctgcacacaactcccgggc
ggcggcggcgcctgcgtgcaaggcgcactcgtgacccaacaacaaaacagcgatgccagg
gcgctaacggcgcccggtgcctcccgggcgccctccccgcccctcacctcctcgggcagc
cgcccccgccccccccatcccgggccgactgccccctccactagcccggccgcgggctca
gagcgcgatcggcaacaatgtttacgttccggggattatgacgtcgacgcctcccccccc
acaactgctgaaaatggtttcctaggactttgcaaacggatctgcttaagtcgcccgatt
gaccgccagagatacgacgagaacgaggacttgtcggacgtggaggagatcgtcagcgtc
cgcggcttcagcctggaggagaagctgcgcagtcagctgtaccagggggacttcgtgcac
gccatggagggcaaagatttcaactatgagtacgtgcagagagaagctctcagggttccc
ctgatatttcgagaaaaggatggactggggattaagatgcctgaccctgatttcacagtc
cgagatgtcaaactcctagtgggcggccgtcggctggtggacgtgatggatgtgaacacg
cagaagggcgcggaaatgagcatgtcccagtttgtgcggtactacgagactcctgaggct
cagagggacaagctgtacaatgtcatcagccttgagttcagccacaccaagctggagcac
ctggtcaagcgtccgactgtggtagacctggtggactgggtggacaacatgtggccccag
catctgaaggagaagcagacagaagccacgaacgccattgcagagatgaaatacccgaaa
gtgaagaaatactgtctgatgagcgtcaaaggttgtttcactgacttccacatcgacttt
ggaggcacttctgtttggtaccatgttttccggggtgggaagatcttttggctgattcct
ccaaccctacacaatttggcactgtacgaggagtgggtgctatcaggcaaacagagtgac
atcttcctgggagaccgcgtggagcgatgccaaagaattgagctgaaacagggctacacg
tttttcatcccttccggttggatccacgcagtctacactcctgtagactctctggtattt
ggtggaaacatcctgcacagctttaacgtgcccatgcagctgcggatctacgagattgag
gacagaacacgggtgcagcccaaattccgttaccccttctactatgagatgtgctggtat
gtcttggagagatacgtatactgtgtgacccagcggtcctacctcactcaggaataccag
agagaatccatgcttattgatgccccaagaaaacccagcatagacggcttctcatctgat
tcctggctggagatggaggaggagtcctgtgagcagcagcctcaggaggaggagaaggag
gaggaggaggaagaggaggaggaggagggtgcagataaggtgcccaaacttccggctgat
ggtcctgcctcgcccaccagcaccccttcagaggaccaggaggcccccgggaagaagccc
aaagcacctgccatgcggttcctccaaaggactttgtctaacgagtcggaggagagtgtg
aagtccacgacggtgcccacagactaccccaagacgcccactggctctccagccacgggg
gtctctgccaagtggacccacctcaccgagtttgagctgaagggcctgaaagcgctggtg
gagaaactggaatctctcccagagaacaagaagtgtgtccccgagggcatcgaggacccc
caggcactcctggagggtgtgaagaatgtcctgaaggagcatgcagacgacgaccccagt
ctggccgtcactggggtccctgtagtcacttggccaaagaagactccaaagaaccgggcg
gtaggtcggcccaaggggaagctgggcccggcctccgccgtgaagttggccgccaaccgg
acgacggcgggagctcgccggcgccggacgcgatgccgcaagtgcgaggcctgcctgcgg
accgagtgcggagagtgtcacttctgcaaggacatgaagaagttcgggggccccgggcgg
atgaagcagagctgtatcatgcggcagtgcatcgcgccagtgctgccccacaccgccgtg
tgcctggtgtgtggcgaggcagggaaagaagacacagtggaagaggaagaaggaaagttt
aacctcatgctaatggagtgctctatctgcaacgaaatcatccaccccggatgccttaag
attaaggagtcagagggcgtggtcaacgatgagcttccaaactgctgggagtgtccaaag
tgtaaccacgccggcaagaccgggaaagcctacaagcaaaagcgtggccctggctttaag
tatgcttccaacctgcccggctccctgctcaaggagcagaagatgaaccgggacaacaag
gaagggcaggagcctgccaagcggaggagtgagtgcgaggaggcgcctcggcgcaggtca
gatgagcaccccaagaaggtgcccccggatggcatcctgcgccgaaagtcagacgacgtg
cacctgaggaggaagcggaaatacgagaagccccaagagctgagtggacgcaagagagcc
tcgacgcttcaaacgtcccccggttcctcctctcacctctcgccgaggccccctctaggc
agcagcctcaacccctggtggagatccagtctcacttacttccagcagcagctaaaacct
ggcaaagaagataagcttttcaggaaaaagcggcggtcctggaagaacgccgaggaccgg
atggcccttgccaacaagcctctccggcgcttcaagcaggagccagaggatgacctgccc
gaggcgccccccaccgcccgggaaagcgaccactcccgttcaagctcccctaccgctggg
cccagcaccgagggggcagagggccctgaggagaagaagaaggtgaagatgcgccggaaa
aggcggcttcccaccaaggagctgagcaaggagctgagcaaggagctgaaccaagagatc
cagaagacggagaacagcctggccaacgagaaccaccagcccatcaagtcagagcccgag
agcgagagcgaggagcccaagcggcccctgggcctctgcgagcgcccccaccgtttcagc
aaggggctcaccggccccccccgggagttgcggcaccagctggggcccggcctgcggagc
ccaccccgtgtcatctcccggccccctccctccgtgtccccgcccaagtgcatccagatg
gagcgacatgtgatccggccgccccccatcagccccccgcctgactcactgcccctggac
gatggggcggcccacgtcatgcacagggaggtgtggatggccgtcttcagctacctcagc
caccaagacttgtgtgtctgcatgcgggtctgcaggacctggaaccgctggtgctgcgat
aagcggttatggacccgcatcgatctgaaccactgcaagtccatcacacccctgatgctg
agtggcatcatccggcggcagcctgtctccctggacctcagctggaccaatatctccaag
aaacagctgagctggctcatcaaccggttgcctgggctccgagacttggtgctgtcgggc
tgctcgtggatcgccgtctcagctctctgtagttccagctgtcctttgctccggaccctg
gatgtccagtgggtggaaggactaaaggatgcccagatgcgggatctcctgtccccgccc
acagataacaggccaggtcagatggacaatcggagcaagctccggaacattgtggaactg
cgtctagcaggcctggacatcacagatgcctccctgcggctcatcatacgccacatgccc
ctgctgtccaagctccacctcagttactgtaaccacgttaccgaccagtccatcaacctg
ctcaccgctgtgggcaccaccacccgagactccttaaccgaaatcaacctatcagactgc
aataaggtgactgaccagtgcctgtccttcttcaaacgctgtggaaatatctgtcatatt
gacctgaggtactgcaagcaggtcaccaaggagggctgtgagcagttcatagctgaaatg
tctgtgagtgtccagtttgggcaagtggaagaaaaactcctacagaaactgagttag
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integrated database retrieval system
