Pseudescherichia vulneris: LMA04_13580
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Entry
LMA04_13580 CDS
T08658
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pvj
Pseudescherichia vulneris
Pathway
pvj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LMA04_13580 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvj03021
]
LMA04_13580 (rpoC)
03400 DNA repair and recombination proteins [BR:
pvj03400
]
LMA04_13580 (rpoC)
Enzymes [BR:
pvj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LMA04_13580 (rpoC)
Transcription machinery [BR:
pvj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LMA04_13580 (rpoC)
DNA repair and recombination proteins [BR:
pvj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LMA04_13580 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WAH51150
LinkDB
All DBs
Position
2820627..2824850
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERHQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGEFVAKTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKYEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDILKPGTADILVPRNTLLHEQMCDLLEENSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKSVVNSAGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVAGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDALARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIANAGSSDFLEGEQVEYSRVKIANRDLEANGKIAASYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDND
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgtcgtgag
cgcatgggccacatcgagctggcgtctccgactgcccacatttggttcctgaaatcgctg
ccgtcccgtatcggtctgctgctggatatgcccctgcgtgatatcgagcgcgtgctgtac
ttcgaatcctatgtggttatcgaaggcggcatgaccaacctggaacgtcatcagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgagttcgacgcgaagatg
ggtgcggaagctatccaggccctgctgaagagcatggatctggagcaggagtgcgagcag
ctgcgtgaagagctgaacgaaactaactccgaaaccaagcgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtctggcaacaagccggagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggtaccgctggacggcggtcgtttc
gccacgtcagatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgtctgctggacctggctgcgcctgacatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggtagatgccctgctggataacggccgtcgtggtcgtgccatcaccggctctaac
aagcgtccgctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggcctgccgaagaagatggcgctggagctgttcaaaccgttc
atctacggcaagctggagctgcgtggcctggccaccaccatcaaagccgctaagaagatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtattcaggcatttgaaccggtt
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacattctgtctccggcgaacggcgaacctatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagccgagcgtatctatcgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgagtatgaaaaagatgaaaac
ggcgaattcgttgcgaaaaccagcctgaaagacacgaccgttggccgtgctattctgtgg
atgatcgtgccgaaaggtctgcctttctccatcgtcaaccaggcgctgggtaagaaagcg
atctccaaaatgctgaacacctgttaccgcattctgggcctgaaaccgaccgttatcttc
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatccgttggt
atcgatgacatggtcatcccggagaagaaatacgagatcatcagcgaagcggaagctgaa
gttgctgagatccaggagcagttccagtctggtctggtcaccgctggcgaacgctacaac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcaaaccgaaaccgtgattaaccgtgacggtcaggaagagcagcaggtctccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gcgggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacggcaaactccggttatctgacccgtcgtctg
gttgacgtcgcgcaggatctggttgttaccgaagatgactgtggcacgctggaaggcatc
accatgaccccggttatcgagggtggtgacgttaaagagccgctgcgcgatcgcgttctg
ggtcgtgtgactgcggaagatatcctgaagccgggtacggcggacattctggttccacgc
aacacgctgctgcatgagcagatgtgtgacctgctggaagagaactccgttgactctgtg
aaagtgcgttccgttgtatcctgtgacaccgactttggtgtgtgtgcccactgctacggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaggctatcggcgttatcgcagca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatcaagctc
agcaacgcgaagtcggttgtgaactctgccggtaaactggtagtgacctcccgtaacacc
gagctgaagctgatcgacgaattcggtcgtaccaaagagagctataaagtgccttacggt
gctgttatggccaaaggtgatggcgagcaggttgccggcggtgaaaccgtagcaaactgg
gatccgcacaccatgccggtaatcaccgaagtggctggtttcatccgcttcaccgatatg
atcgacggccagacgattactcgtcagaccgacgagctgaccggtctctcctcgctggtg
gttctggactctgcagaacgtaccgcgggtggtaaagatctgcgtccggccctgaaaatc
gttgatgccaacggtaacgacgttctgatcccgggcaccgacatgccggctcagtacttc
ctgccgggtaaagcgattgttcagctggaagatggcattcagatcggtgcaggtgatgct
ctggcgcgtattcctcaggaatccagcggtaccaaggatattaccggtggtctgccgcgc
gttgcggacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgagatcagc
ggtattatctccttcggtaaagagaccaaaggtaaacgccgtctggtgatcactccggtt
gatggtagcgatccgtacgaagagatgatcccgaaatggcgtcagctcaacgtgtttgaa
ggcgagcgcgtagagcgtggtgacgtggtttccgacggtccggaagcaccgcacgacatc
ctgcgtctgcgtggcgttcatgcggtaacccgttacatcgtgaacgaagtgcaggacgtt
taccgtctgcagggcgttaagatcaacgataagcacatcgaagttatcgtgcgtcagatg
ctgcgtaaagcaaccatcgctaacgcgggaagctccgacttcctggaaggcgagcaggta
gagtactctcgcgttaagatcgccaaccgcgatctggaagcgaacggcaaaatcgcggca
agctatgctcgcgacctgctgggtattaccaaagcgtctctggcaaccgagtccttcatc
tccgcggcatcgttccaggagaccacgcgtgtgcttaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggtctgaaagagaacgttatcgtgggtcgtctgatcccggccggt
accggttatgcgtaccaccaggatcgtatgcgccgtcgcgccgctggcgaactgccggca
gcaccgcaggttactgctgaagacgcgtctgccagcctggcagagctgctgaacgcaggc
ctgggcggttccgacaacgactaa
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