Pseudomonas viciae: EPZ47_07570
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Entry
EPZ47_07570 CDS
T07167
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pvk
Pseudomonas viciae
Brite
KEGG Orthology (KO) [BR:
pvk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvk03019
]
EPZ47_07570 (hrpA)
Enzymes [BR:
pvk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EPZ47_07570 (hrpA)
Messenger RNA biogenesis [BR:
pvk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EPZ47_07570 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
AAA_25
nSTAND3
NACHT
T2SSE
AAA_30
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QBZ88571
UniProt:
A0A4P7PDC7
LinkDB
All DBs
Position
1631492..1635403
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDQAPAIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVTRMQASCDQVLARK
ASLPVIRYDDNLPIAAKRDEIKDALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDANTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDPDSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLSLNKEPADFPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWVHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAY
EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREALVRGEIQSKAKCLDANTKLLEQLDEL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRINSQKDPQLLIMREEDVLARE
ANEVTAAYYPDTLRVGDLTLPLSYHFEPNHPRDGVTLRVPAPLLPMMPPERLEWLVPGMI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRITFAEGSLPQSLGRELLRMTGARVSDEA
WAEAAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQAPVE
AKIFAPVAEKTQQKIAGLSMTVYPALVEEGGVVKEGRFPTPAEAEFQHRRALQRLLMQQL
AESAKFLRGKLPGLTELGLLYRDLGRIDSLVEDILLASVDSCVLEGEASLPRDGAALASL
AERKRGGWTEHAERLAKLTLDILKLWHGLQKRFKGKIDLAQAVALNDIKLQLSHLVYPGF
VRETPHQWLKELPRYLKAIEQRFEKLGSQVQKDRVWSGELSNLWAQYQARASKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWGQVEG
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccaagcccccgctatcgacaagctgctgaaaaacctcgaccacgccatgctc
gccgaccgtcaccggttgcggcgccagttgctcgagctgcgcaagaaacccgatgaggcc
aagctggcccagtgggtgacgcgcatgcaggcgtcgtgcgatcaggtgctggcgcgcaag
gcgagcctgccggtgatccgctacgacgacaatttgccgatcgccgccaagcgcgacgaa
atcaaggacgcgttgctcaagcatcaggtgctgatcatcgccggcgaaaccggctcgggt
aaaaccacgcagttgcccaagatctgcctggagatcggtcgcggccagcatggcttgatc
ggccacacccagccacgccggatcgccgcccgcagcgtcgccagtcgggtggccgaggaa
ctggccacgccgttgggggcgctggtgggttatcaggtgcggttcgaggaccagagcgac
gccaacaccctgatcaagctgatgaccgacggcatcctgctggccgaaacccagaacgac
cgctacctggaacgctatgacacgatcatcgtcgacgaagcccacgaacgcagcctgaac
atcgacttcctgctcggctacctcaagaccttgctgccgcgtcgtcccgacctgaaagtc
atcatcacctcggcaaccatcgacctggagcgcttctccaagcatttcgatgacgcgccg
atcgtggaagtctcggggcgcaccttcccggtggaaacctggtatcgcccgctgaccctg
gagcaggacgaagagggcaatcgcgtcgaggacgacttgacggtcgatcaggcaatcctt
gccaccctcgatgaaatcgccgcctatgagcgcagcgagcgccgcagccctggggatgtg
ttggtgttcctgccgggtgaacgggagattcgcgacgcggcggagatgttgcgcaaagcc
cagctcaagcacaccgagattttgccgttgtatgcgcgattgtcgccggccgaacagcag
cggatcttccagtcccacccaggccgtcgcgtggtgctggcgaccaacgtcgctgaaacc
tcgctcactgtgccgggcatccgctacgtgatcgacagcggcaccgcgcgcatcagccgc
tacagctatcgcgccaaggtccagcgcctgcccatcgaagccatttcccaggccagcgcc
aaccagcgcaagggccgctgcggacgggtcgaaccgggaatctgcgtgcgtttgtacagc
gaggaggatttcctcggtcgaccggagttcaccgatccagaaatcctgcgcaccaacctg
gcggcggtgattttgcagatgctgcacctgcgcctgggtgagatcaccgatttcccgttc
atcgaaccgccagatggcaaggccatcagcgacggtttcaacctgctgcaagaattgtcg
gcggtggatcgcaacagccaactgactccgctcggtcgccaattggcgcgcctgccggtg
gacccgcgcatgggccgcatgctgttggaagcggcgaaactgggcagcctgcaggaagtg
ctgatcgtcgccagcgccatgtcgatccaggacccccgcgagcgtccgcccgaacgccaa
caggcggccgaccaggcccacgcccaatggaaggacccggactcggacttcgccgggctg
gtcaacctgtggcgcggtttcgaagagcagcgccaggccctgaccgccagcccgctgcgc
aattggtgccgcaagaatttcctcaactacctgcgcctgcgcgagtggcgtgattcccat
cgccagttgagcctgatctgtcgcgacatgcagttgagcctcaataaagaaccggccgat
tttcctaaactgcacaaagcggtgctctcggggctgttgagccagatcggccagaaaacc
gaagacggcgattacctcggtgctcgtcagcgacggttctgggtccacccgtcgtcgggc
ctgggcaagaagcgcccgcagtggctgatgaccgccgagctggtggaaaccaccaagttg
tacgcgcgcatggtcgccaagatcgaaccggactggatcgaaccgctggccgggcacttg
atcaagaaaaaccacttcgaaccccattgggagaagaagcgcgggcaagtggtggcgtat
gagcagatcaccctgttcgggctgattgtggtcggtcgccggccggtgcattacgggccg
gtggacccggtggtgtcgcgggagctgttcatccgtgaggcgttggtgcgcggtgagatc
cagtccaaggccaagtgcctggacgccaataccaagctgctggagcagctcgacgaactg
gaagccaaggcccgccgccgtgacatcctggcggacgaggaaaccctgttcgctttctac
gatgcgcgcttgccggccgagattcaccagaccgcgacgttcgatagttggtaccggatc
aacagccagaaagacccgcagttgctgatcatgcgtgaagaagacgtgctggcgcgcgag
gccaatgaagtcaccgccgcgtactacccggacaccctgcgcgtcggcgacctgactttg
ccgctgagctaccacttcgaacccaaccatccccgcgatggcgtgaccctgcgagtgccg
gcgccattgctgccgatgatgccgccggagcgcctggaatggctggtgccggggatgatc
gaggccaagtgcatcgccctggtgcgcaacttgcccaaggcattgcgcaagaacttcgtg
ccggtgccggacttcgtcaaggccgcgctgcaacgcatcaccttcgccgagggttcattg
ccgcaatccctgggccgtgaactgttgcgcatgaccggcgcgcgggtcagcgacgaagcc
tgggccgaagcggcgcagcaggtagaaagccacctgcgcatgaacctggaaattgtcgat
ggccagggcaaattcctcggcgaaggccgcgacctggccgagctgacggcgcgctttgcc
gaagccagccaggcggcattggccgtgccgcaaacggcaaaaagccaggcgccggtggag
gcgaaaattttcgcgccggtggcagagaaaacccaacagaagatcgccgggctgtcgatg
acggtgtacccggcgctggtggaagaggggggtgtggtcaaggaagggcgtttcccgacc
ccggccgaagccgagttccaacatcgccgcgccttgcagcgcttgttgatgcagcagttg
gccgagtcggcgaaattcctgcggggcaagctgccggggctcacggagttgggcctgttg
taccgcgacttggggcgcatcgacagcctggtggaagacatcctgctggccagcgtcgac
agttgcgtgctggagggtgaagcaagcctgccccgtgacggcgccgcgctcgcttccctg
gccgagcgcaagcgcggtggctggaccgaacacgccgaacgcctggcgaagctgaccctg
gacatcctcaagctctggcacggtctgcaaaaacgcttcaagggcaagatcgacctggcc
caggccgtggccctgaatgacatcaagctacagctcagccatttggtgtatccgggcttc
gtgcgcgaaaccccgcatcaatggctcaaggaactgccacgctacctcaaggccatcgag
caacgcttcgagaagctcggcagccaggtgcagaaggatcgggtctggagcggcgagttg
tcgaacctctgggcccaataccaggcccgcgccagtaaacacgcccaggaaggcaagcgc
gatccgcaactcgagctgtaccgctggtggctggaggagtaccgggtgtcgctgttcgct
cagcagttgggcaccaaggtgccgatttcggataagcgcttgagcaagcagtgggggcag
gtggagggttga
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