Pseudomonas viciae: EPZ47_09545
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Entry
EPZ47_09545 CDS
T07167
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pvk
Pseudomonas viciae
Pathway
pvk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EPZ47_09545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvk03400
]
EPZ47_09545
Enzymes [BR:
pvk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EPZ47_09545
DNA repair and recombination proteins [BR:
pvk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EPZ47_09545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBZ88948
UniProt:
A0A4P7PEA8
LinkDB
All DBs
Position
complement(2091613..2095062)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT
QFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVETGVGRERFPAKPLPDL
AIEAKATQPLAALASFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAG
KERLAITIAPLNDGLVLDDPALALVAESPLFGQRVMQRRRREKRADAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDHQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFP
FEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLP
DVHARLILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQLGIKKV
DGGPNGGRLEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERSEERFNTVEAL
FERLTPTTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtcttccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccattgccgaggctgccagcgctgcaaagcgcttt
accctactgctgaccgccgacagccaaagcgccgagcggctggaacaggagctgagtttc
ttcgccccggatttgcccgtgctgcattttccggactgggaaaccctgccctacgatctg
ttttcgccccaccaggacatcatttcccagcgaatcgccagcctatatcggctgccggag
ctcagtcatggcgttttggtagtgccgatcaccacagccctacatcgcctggcaccgacc
caattcctgctcggcagcagcctggtgctggacatcggccagaagctcgacgtcgaacaa
atgcgcacccggcttgaggccagcggctatcgctgcgtcgacacggtgtacgagcatggc
gaattcgcggtacgcggcgccctgatcgacctgtttccgatgggcagcaaactgccttat
cgcatcgacctgttcgatgacgagatcgaaaccctgcgcactttcgatccggaaaaccag
cgttccatcgataaggtgcagtcgatccgcctgttgccggccaaggagttcccgctgcag
aaagacgccgtgacccgcttcaaggcgcggtttcgcgagcgcttcgatgtggatttccgc
cgctgcccgatcttccaggacctgagcagcgggatcacccctgccggcatcgagtactac
ctgccgctgtttttcgaagaaacatccaccctgttcgattacctgccccaggacacacag
gtgttttccttgccgggcatcgaacaggcggcggaaaacttctggaacgacgtgcgcaac
cgctacgaagaacgccgcgtcgatccttcccgtcctttattgccaccggccgagctgttc
ctgccggtggaagactgctttgcccgcctcaagaattggccacgggtggtggcgagccaa
caggacgtggaaaccggcgttggccgtgaacgtttcccggccaagcctctaccggacctg
gccattgaagccaaggccacgcaacccctggcggcactggccagcttcctcgacgaattt
cccggccgcgtgctgttcaccgccgagtccgccggccgtcgcgaagtgctgctggaactg
ctcgaacgcctgaagctgcggccgaagacagtggacagctggccggatttcgtcgcgggt
aaagagcgcctggcgattaccatcgcgccactgaacgacggcctggtcctggatgaccca
gcccttgccttggtcgccgaaagcccgttgttcggccaacgcgtcatgcagcgtcgccgt
cgcgagaaacgcgccgacgccgccaacgatgcggtgatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcacatcgaccacggcgtgggccgctacctgggcctcgcgact
ctggaaatcgaccaccaggccgccgaattcctcacactggagtacgccgagggcgccaaa
ctctacgtgcccgtggcgaacctgcacctgatcgcccgttacaccggcagcgacgacgcc
ctggccccgctgcatcgcctgggttcggaaacctggcagaaagccaagcgcaaggccgcc
gagcaggtgcgtgacgtggccgccgaactgctggacatctacgcccgccgcgctgcccgc
gagggttacgccttcgccgatccgaaagccgactacgaaaccttcagcgccggtttcccg
ttcgaagaaaccgtcgaccagcagaccaccatcgaagccgtgcgcgccgacatgctcgcg
cccaagccgatggaccgcctggtgtgcggcgacgtgggtttcggcaagaccgaagtggcc
atgcgcgccgcgttcattgccgtacacggcggcaagcaggtggcgatcctggtgccgacc
accctgctcgcccagcagcactacaacagtttccgcgaccgtttcgccgactggccagtg
accgtggaagtgatgagccgcttcaaatccaccaaggaagtgaatgccgccgtggccgac
ctggccgagggtaagatcgacattgtcatcggcacgcacaagttgctgcaggacgacgtg
aagatcaaaaaccttgggctggtgatcatcgacgaagagcaccgcttcggggtgcgccag
aaagaacagctcaaggccctgcgcagcgaagtcgatatcctgaccctgaccgccacgccg
atcccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccaca
ccgccggcccggcgcctgtcggtgcgcaccttcgtcatggagcagaacaaaagcacgatc
aaggaagccttgctgcgcgagctgctgcgtggcggccaggtctattacctgcacaacgac
gtgaagaccatcgagaagtgcgccgccgacctcgccgaactggtgccggaagcccgcatt
ggtatcggccatgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcccagttgcaccag
ttgcgcggtcgggtcgggcgcagtcaccaccaggcctacgcctacctgttgacgccgcca
cgccagcagatcaccccggatgcggaaaagcgcctggaagcgatcgccaacacccaggac
ctcggtgccggattcgtgttggccaccaacgacctggaaatccgtggcgctggcgaattg
ctcggcgatggccagagcggccagatccaggccgtcggcttcaccctgtacatggaaatg
ctcgaacgggcggtcaagtcgatccgcaagggcgaacaaccgaacctcgatcagcccctg
ggcggcgggccggaaatcaaccttcgggtgccggcactgatcccggaagattacctgccg
gatgtccacgcacggctgatcctctacaaacgcattgcctcggccagcgacgaagaaggc
ctcaaggatctgcaagtggagatgatcgaccgcttcggcctgctgcccgaaccgaccaag
aacctggtgcgcaccacgttgctcaagctcaaggccgaacaactgggcatcaagaaagtc
gacggcgggcccaacggcggccgtctcgagttcgaggcccagacgccggtcgatccactg
gtgctgatcaaactgatccagggccagcccaaacgctacaagttcgaaggtgccacgatg
ttcaaattcatggtgcccatggagcgctctgaagagcgcttcaataccgtagaagcgctg
tttgagcgcctcactccgaccactgcttga
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