Pseudomonas viciae: EPZ47_15120
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Entry
EPZ47_15120 CDS
T07167
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pvk
Pseudomonas viciae
Pathway
pvk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pvk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EPZ47_15120 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvk03400
]
EPZ47_15120 (ligD)
Enzymes [BR:
pvk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EPZ47_15120 (ligD)
DNA repair and recombination proteins [BR:
pvk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EPZ47_15120 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QBZ89996
UniProt:
A0A4P7PH89
LinkDB
All DBs
Position
complement(3368609..3371224)
Genome browser
AA seq
871 aa
AA seq
DB search
MSSKTLEDYNRMRDFAATPEPAAKRSRKSAKAAHALQFCIQKHDASRLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPQGDA
HEAYEKGRLKFELQGEKLAGLWNLVRTHMPGKQEQWFLIKHQDEAARPACEYDVVQAEPD
SVLSDRTLVPKRRGTAAAKAAKAPEKAAKAKPSKKASKTTLNGAVVGPIPATLKPELATL
VETAPDGEWLYEIKFDGYRVMARIEHGDVRLITRNGHDWTHKLPKQAEALAGLGLESAWL
DGEMVVANDQGVPDFQALQNAFEVGSSAKIAYYLFDLPYLNGMDLRKVPVEARRAALAAV
LERNEDPLLRFSDAFEETPEALLNSACQMQMEGLIGKRLGSAYVSRRSNDWIKLKCKNRQ
EFVVVGFSDPKGARNAFGALLLGLHDADSGELRYAGKVGTGFNETTLKSIHQQLLPLETK
KAAVVNPPTGYEAKGVHWLKPTLLAEVAFAEMTKEGSVRHAVFHGLRNDKPAEAITQELA
KPVKKPASTKKSSATGKAEKKPAKSKAKATQAPAMDAKVRITHPDRVIDVSSGTTKLQLA
EYYASVAEFILPELADRPVALVRAPDGIAGELFFQKNAEHLAIPGITCLDKALTGQPVMI
INNAEALIGAVQMSTVELHTWNATTVNLDKPDRFVLDLDPDPALPWKRMVEATQLTLSVL
DELGLKAFLKTSGGKGIHVVVPLTRKLGWDEVKGFSHAIVSHMAKLLPDRFSAVSGPKNR
VGRIFIDYLRNGLGATTICAYAARTREGLPVSVPIFREEVAELKGANLWNVHNVHERLME
VGHEPWAGLKKTRQSITADMRRRIGMKKPDK
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaagacccttgaggactacaaccgcatgcgcgatttcgccgccaccccggag
ccggcggcgaaacgctcgcgcaaatcagcaaaagccgcccatgccttgcagttctgcatt
caaaagcacgatgcctcgcggctgcattacgacttccgcctggagctggacggtgcgctc
aagagctgggcggtgcccaaggggccgtccctggaccctaaggtcaagcgcctggcggtc
catgtcgaagaccatcccttggattacgcgacgtttgagggcagcattcccgaagggcat
tacggtgccggcgatgtcattgtctgggaccgaggcgtgtggattccccagggcgatgcc
cacgaagcttatgaaaaaggccggctcaagttcgagctgcaaggcgaaaagctcgccggc
ctgtggaatctggtgcgcacccacatgcccggcaagcaggagcagtggttcttgatcaag
catcaggacgaggcggcccgcccggcatgcgaatatgacgtggtgcaagcggagccggac
agcgtgctcagcgatcgcaccctggtgcccaagcggcggggcaccgccgcagccaaagcc
gcaaaagcacctgaaaaagccgccaaggcgaaaccgtcaaaaaaagcctcgaaaaccacc
ctcaacggcgccgtggtcgggccgatccccgcaacactcaaacctgagctggccaccttg
gtggagactgcgcccgacggcgaatggctctacgaaatcaagtttgacggttaccgggtc
atggcgcgcattgaacacggcgatgtacggctgatcacccgcaacggccatgactggacc
cacaaactgcccaagcaagccgaggctttggccggcttggggttggagtcggcctggctc
gacggcgaaatggtggtggccaacgaccagggtgtgccggacttccaggccttgcagaac
gccttcgaggtcggcagcagcgccaagatcgcttattacctgttcgacttgccttatctc
aacggcatggatctgcgcaaagtgcccgtggaggcgcgacgggccgcgctggcggcggtg
ctcgaacgcaacgaagatccactgctgcggttttccgatgccttcgaagaaacccctgaa
gcgttgctcaatagcgcctgccagatgcagatggaggggctgatcggcaaacggctgggc
agcgcctatgtttcccggcgcagcaatgattggatcaagctcaaatgcaagaatcgccag
gagttcgtggtggttgggttcagcgaccccaagggtgcccgcaacgccttcggcgccttg
ctgctggggctgcatgatgctgacagcggtgagttgcgctacgccggcaaggtcggcacc
gggtttaatgaaaccacccttaaaagcatccaccaacagctgttgcccttggaaacgaag
aaggccgccgtggtcaatccgcctaccggctacgaagccaaaggcgtgcattggctgaaa
ccgacgctgctggccgaggtggcgtttgccgaaatgaccaaggaaggctcggtgcgtcat
gccgtgttccatggtttgcgcaacgacaaaccggccgaggcaatcactcaggagcttgcc
aaacccgtgaaaaagcccgcttctacgaagaaatcctcagcgacaggcaaagctgaaaaa
aaaccggccaaatccaaggcgaaagccacccaggcgccggccatggacgcaaaggtgcgt
atcacgcatccggaccgagtcatcgacgtcagcagtggcaccaccaagctgcaactggcc
gagtattacgccagcgtcgccgaattcattctgccggaattggctgatcgcccggtggcg
ctggtgcgcgcacccgatgggatcgccggtgagctgttcttccaaaaaaacgccgaacac
ctggcgatccccggcataacctgcctggacaaggcgctgacggggcagccggtgatgatc
atcaacaacgccgaggccctgatcggcgcggtgcagatgagcacggtggagctgcacacc
tggaacgccacgacggtgaacctggacaagcccgaccgctttgtcctcgaccttgacccg
gatccggcattgccctggaaacgcatggtggaggccacgcaactgaccttgtcggtgctc
gatgagctgggactcaaggcgtttctcaagaccagcggcggcaagggcattcatgtggtg
gtgccgttgacgcgaaagttgggttgggatgaggtcaagggattcagccatgccatcgtc
agccacatggccaagctgttgccggaccgtttctcggcggtgtccgggccaaaaaaccgg
gtagggcggattttcatcgattacctgcgcaacggtttgggcgctaccaccatttgcgcc
tatgccgcgcgcacccgggaagggctgccggtgtcggtgccgatctttcgcgaggaagtt
gccgagctcaagggcgcgaacctgtggaacgtgcacaacgttcatgagcgcctgatggaa
gtcggtcacgagccctgggccggcctcaagaaaacccgccagagcatcaccgccgacatg
cgtcggcggattggcatgaaaaagcccgataagtag
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