KEGG   Pseudomonas viciae: EPZ47_15120
Entry
EPZ47_15120       CDS       T07167                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pvk  Pseudomonas viciae
Pathway
pvk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pvk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EPZ47_15120 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pvk03400]
    EPZ47_15120 (ligD)
Enzymes [BR:pvk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EPZ47_15120 (ligD)
DNA repair and recombination proteins [BR:pvk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EPZ47_15120 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QBZ89996
UniProt: A0A4P7PH89
LinkDB
Position
complement(3368609..3371224)
AA seq 871 aa
MSSKTLEDYNRMRDFAATPEPAAKRSRKSAKAAHALQFCIQKHDASRLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPQGDA
HEAYEKGRLKFELQGEKLAGLWNLVRTHMPGKQEQWFLIKHQDEAARPACEYDVVQAEPD
SVLSDRTLVPKRRGTAAAKAAKAPEKAAKAKPSKKASKTTLNGAVVGPIPATLKPELATL
VETAPDGEWLYEIKFDGYRVMARIEHGDVRLITRNGHDWTHKLPKQAEALAGLGLESAWL
DGEMVVANDQGVPDFQALQNAFEVGSSAKIAYYLFDLPYLNGMDLRKVPVEARRAALAAV
LERNEDPLLRFSDAFEETPEALLNSACQMQMEGLIGKRLGSAYVSRRSNDWIKLKCKNRQ
EFVVVGFSDPKGARNAFGALLLGLHDADSGELRYAGKVGTGFNETTLKSIHQQLLPLETK
KAAVVNPPTGYEAKGVHWLKPTLLAEVAFAEMTKEGSVRHAVFHGLRNDKPAEAITQELA
KPVKKPASTKKSSATGKAEKKPAKSKAKATQAPAMDAKVRITHPDRVIDVSSGTTKLQLA
EYYASVAEFILPELADRPVALVRAPDGIAGELFFQKNAEHLAIPGITCLDKALTGQPVMI
INNAEALIGAVQMSTVELHTWNATTVNLDKPDRFVLDLDPDPALPWKRMVEATQLTLSVL
DELGLKAFLKTSGGKGIHVVVPLTRKLGWDEVKGFSHAIVSHMAKLLPDRFSAVSGPKNR
VGRIFIDYLRNGLGATTICAYAARTREGLPVSVPIFREEVAELKGANLWNVHNVHERLME
VGHEPWAGLKKTRQSITADMRRRIGMKKPDK
NT seq 2616 nt   +upstreamnt  +downstreamnt
atgagcagcaagacccttgaggactacaaccgcatgcgcgatttcgccgccaccccggag
ccggcggcgaaacgctcgcgcaaatcagcaaaagccgcccatgccttgcagttctgcatt
caaaagcacgatgcctcgcggctgcattacgacttccgcctggagctggacggtgcgctc
aagagctgggcggtgcccaaggggccgtccctggaccctaaggtcaagcgcctggcggtc
catgtcgaagaccatcccttggattacgcgacgtttgagggcagcattcccgaagggcat
tacggtgccggcgatgtcattgtctgggaccgaggcgtgtggattccccagggcgatgcc
cacgaagcttatgaaaaaggccggctcaagttcgagctgcaaggcgaaaagctcgccggc
ctgtggaatctggtgcgcacccacatgcccggcaagcaggagcagtggttcttgatcaag
catcaggacgaggcggcccgcccggcatgcgaatatgacgtggtgcaagcggagccggac
agcgtgctcagcgatcgcaccctggtgcccaagcggcggggcaccgccgcagccaaagcc
gcaaaagcacctgaaaaagccgccaaggcgaaaccgtcaaaaaaagcctcgaaaaccacc
ctcaacggcgccgtggtcgggccgatccccgcaacactcaaacctgagctggccaccttg
gtggagactgcgcccgacggcgaatggctctacgaaatcaagtttgacggttaccgggtc
atggcgcgcattgaacacggcgatgtacggctgatcacccgcaacggccatgactggacc
cacaaactgcccaagcaagccgaggctttggccggcttggggttggagtcggcctggctc
gacggcgaaatggtggtggccaacgaccagggtgtgccggacttccaggccttgcagaac
gccttcgaggtcggcagcagcgccaagatcgcttattacctgttcgacttgccttatctc
aacggcatggatctgcgcaaagtgcccgtggaggcgcgacgggccgcgctggcggcggtg
ctcgaacgcaacgaagatccactgctgcggttttccgatgccttcgaagaaacccctgaa
gcgttgctcaatagcgcctgccagatgcagatggaggggctgatcggcaaacggctgggc
agcgcctatgtttcccggcgcagcaatgattggatcaagctcaaatgcaagaatcgccag
gagttcgtggtggttgggttcagcgaccccaagggtgcccgcaacgccttcggcgccttg
ctgctggggctgcatgatgctgacagcggtgagttgcgctacgccggcaaggtcggcacc
gggtttaatgaaaccacccttaaaagcatccaccaacagctgttgcccttggaaacgaag
aaggccgccgtggtcaatccgcctaccggctacgaagccaaaggcgtgcattggctgaaa
ccgacgctgctggccgaggtggcgtttgccgaaatgaccaaggaaggctcggtgcgtcat
gccgtgttccatggtttgcgcaacgacaaaccggccgaggcaatcactcaggagcttgcc
aaacccgtgaaaaagcccgcttctacgaagaaatcctcagcgacaggcaaagctgaaaaa
aaaccggccaaatccaaggcgaaagccacccaggcgccggccatggacgcaaaggtgcgt
atcacgcatccggaccgagtcatcgacgtcagcagtggcaccaccaagctgcaactggcc
gagtattacgccagcgtcgccgaattcattctgccggaattggctgatcgcccggtggcg
ctggtgcgcgcacccgatgggatcgccggtgagctgttcttccaaaaaaacgccgaacac
ctggcgatccccggcataacctgcctggacaaggcgctgacggggcagccggtgatgatc
atcaacaacgccgaggccctgatcggcgcggtgcagatgagcacggtggagctgcacacc
tggaacgccacgacggtgaacctggacaagcccgaccgctttgtcctcgaccttgacccg
gatccggcattgccctggaaacgcatggtggaggccacgcaactgaccttgtcggtgctc
gatgagctgggactcaaggcgtttctcaagaccagcggcggcaagggcattcatgtggtg
gtgccgttgacgcgaaagttgggttgggatgaggtcaagggattcagccatgccatcgtc
agccacatggccaagctgttgccggaccgtttctcggcggtgtccgggccaaaaaaccgg
gtagggcggattttcatcgattacctgcgcaacggtttgggcgctaccaccatttgcgcc
tatgccgcgcgcacccgggaagggctgccggtgtcggtgccgatctttcgcgaggaagtt
gccgagctcaagggcgcgaacctgtggaacgtgcacaacgttcatgagcgcctgatggaa
gtcggtcacgagccctgggccggcctcaagaaaacccgccagagcatcaccgccgacatg
cgtcggcggattggcatgaaaaagcccgataagtag

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